1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGAAGAAGCTTAACCTTCCAATCCTCCCAACCACAACCATTGGATCCTTCCCACAGACCGTGGAACTCAGGAGAGTTCGCCGTGAATACAAGGCCAAGAAgttagtctcttaatcataatttttttgcattgatcatttaagcatgtttagtaagttgattgtgatgctaactggaactctttcttctactag
species | Arabidopsis thaliana |
transcript | AT3G03780.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCACAGACCGTGGAACTCAGGAGAGTTCGCCGTGAATACAAGGCCAAGAA AATCTCTGAAGAGGATTACGTCAAGGCCATCAAGGAAGAGATCAAGAAAGTEST: gi|86057391|gb|DR353148.1|DR353148
genomic: CCACAGACCGTGGAACTCAGGAGAGTTCGCCGTGAATACAAGGCCAAGAAgttagtctct ... cttctactagAATCTCTGAAGAGGATTACGTCAAGGCCATCAAGGAAGAGATCAAGAAAGT
EST: CCACAGACCGTGGAACTCAGGAGAGTTCGCCGTGAATACAAGGCCAAGAA AATCTCTGAAGAGGATTACGTCAAGGCCATCAAGGAAGAGATCAAGAAAGTEST: gi|86057392|gb|DR353149.1|DR353149
genomic: CCACAGACCGTGGAACTCAGGAGAGTTCGCCGTGAATACAAGGCCAAGAAgttagtctct ... cttctactagAATCTCTGAAGAGGATTACGTCAAGGCCATCAAGGAAGAGATCAAGAAAGT
EST: CCACAGACCGTGGAACTCAGGAGAGTTCGCCGTGAATACAAGGCCAAGAA AATCTCTGAAGAGGATTACGTCAAGGCCATCAAGGAAGAGATCAAGAAAGT
genomic: CCACAGACCGTGGAACTCAGGAGAGTTCGCCGTGAATACAAGGCCAAGAAgttagtctct ... cttctactagAATCTCTGAAGAGGATTACGTCAAGGCCATCAAGGAAGAGATCAAGAAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGAAGCTTAACCTTCCAATCCTCCCAACCACAACCATTGGATCCTTCCCACAGACCGTGGAACTCAGGAGAGTTCGCCGTGAATACAAGGCCAAGAAgttagtctcttaatcataatttttttgcattgatcatttaagcatgtttagtaagttgattgtgatgctaactggaactctttcttctactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA