1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaacaacactgtacacttaaaatctcaaatagtgatgaatgtttctgcaactaacttctttattttatcttctagATTCACACTCACATGTGTTACTCAAACTTCAACGACATCATCCACTCAATCATTGACATGGACGCTGATGTCATCACCATTGAGAACTCTCGTTCAGACG
species | Arabidopsis thaliana |
transcript | AT3G03780.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCGTCCAAGACAGCACTCAG ATTCACACTCACATGTGTTACTCAAACTTCAACGATATCATCCACTCAATCEST: gi|124784428|gb|EH874168.1|EH874168
genomic: GCGTCCAAGACAGCACTCAGgtaacaacac ... tatcttctagATTCACACTCACATGTGTTACTCAAACTTCAACGACATCATCCACTCAATC
EST: CTGTTCACTCTTTCAGAATCACCAACTGTGGCGTCCAAGACAGCACTCAG ATTCACACTCACATGTGTTACTCAAACTTCAACGACATC
genomic: CTGTTCACTCTTTCAGAATCACCAACTGTGGCGTCCAAGACAGCACTCAGgtaacaacac ... tatcttctagATTCACACTCACATGTGTTACTCAAACTTCAACGACATC
aatctcaaatagtgatgaatgtttctgcaactaacttctttattttatcttctagATTCACACTCACATGTGTTACTCAAACTTCAACGACATCATCCACTCAATCATTGACATGGACGCTGATGTCATCACCATTGAGAACTCTCGTTCAGACG
aactaac putative branch site (score: 1)
cttctttattttatct CT-rich tract
taacttctttatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaacactgtacacttaaaatctcaaatagtgatgaatgtttctgcaactaacttctttattttatcttctagATTCACACTCACATGTGTTACTCAAACTTCAACGACATCATCCACTCAATCATTGACATGGACGCTGATGTCATCACCATTGAGAACTCTCGTTCAGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT