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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccacttgtatattaactaatgattcgtttatttccatcttgcattggcaaaaacctgcgatcatgttcatccgttgtctgttttcattctgcattcacttctgaagtatattttgtttttattgacagAATTGCTGGGCATTAGGTAGAGCTTATGAGATGAATGTGGTTCATTTTCCAGGTTACAGCCTTGTAGTTCCATTGTTGCTACTATATGTTATCTGCAAAA

Basic information

species Arabidopsis thaliana
transcript AT3G03305.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075792|gb|DR371549.1|DR371549
EST:     GGAAATCGGTCTTGCTGGCTTCATTAGCTCTATATTGGAAGCATTTCAAG                         AATTGCTGGGCATTAGGTAGAGCTTATGAGATGAATGTGGTTCATTTTCCA
genomic: GGAAATCGGTCTTGCTGGCTTCATTAGCTCTATATTGGAAGCATTTCAAGgtaccacttg ... ttattgacagAATTGCTGGGCATTAGGTAGAGCTTATGAGATGAATGTGGTTCATTTTCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtctgttttcattctgcattcacttctgaagtatattttgtttttattgacagAATTGCTGGGCATTAGGTAGAGCTTATGAGATGAATGTGGTTCATTTTCCAGGTTACAGCCTTGTAGTTCCATTGTTGCTACTATATGTTATCTGCAAAA
                                     ttttgttttt  CT-rich tract
                            tgaagtatattttgtt  TA-rich tract