Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttatgctctcccagcctggtctatagtttgttctcttgattattttggttgtgatgaaaagttatatgttacagtgtgctaacggttctgtgttttgttatacagACTAGCGAACGTAAACATCTGTTTGTCGGTATTGACACCACAATGCATATTGGATTACGCGGCCCAACAAATCTCTTTGGGCATCCAACTGATGAACTTT

Basic information

species Arabidopsis thaliana
transcript AT3G03305.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G03305.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv00s0207g00100.t01 (Vitis vinifera), 3'ss of exon 2
gttggttatgctctcccagcctggtctatagtttgttctcttgattattttggttgtgatgaaaagttatatgttacagtgtgctaacggttctgtgttttgttatacagACTAGCGAACGTAAACATCTGTTTGTCGGTATTGACACCACAATGCATATTGGATTACGCGGCCCAACAAATCTCTTTGGGCATCCAACTGATGAACTTT
    ||| ||  |    ||     | | || |   | ||    |  ||  |  || |    | |  || |||     |   |  | ||  || | || |   || |  ||||| | | | | || ||||| ||||| || ||||| | |||||||  |||||| ||||| |||||||| ||||| ||||||||||| |||||  |||| |
----gtt-tggacatgaagttaaatat-taataaatccttccaaaaatgataattat----agagcttttattacttatcattttcacttttttatgctccattgtgtagACTGGTGGAAGGAAGCATCTCTTTGTTGGGATTGATAGCACAATGTCTATTGGTTTACGAGGCCCAACTAATCTTTTTGGGCATCCGACTGACCAACTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatgaaaagttatatgttacagtgtgctaacggttctgtgttttgttatacagACTAGCGAACGTAAACATCTGTTTGTCGGTATTGACACCACAATGCATATTGGATTACGCGGCCCAACAAATCTCTTTGGGCATCCAACTGATGAACTTT
                          tgctaac  putative branch site (score: 1)
                                          ttttgtt  putative PPT
      aaaagttatatgtta  TA-rich tract