1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTAAATGAACAGGATGTCGAGTTATGGATCGTGAAGGCAATAACTGCAAAACTGATTGAGTGTAAGATGGATCAGATGAACCAAGTTTTAATTGTCAGgcaagtcacacatctattgaaactctgcacttatctaaacgcaacattcattatttgatggtttgattcatatcttacag
species | Arabidopsis thaliana |
transcript | AT3G02200.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAACTGATTGAGTGTAAGATGGATCAGATGAACCAAGTTTTAATTGTCAG CCGCTCTTCCGAACGTGAATTTGGGACAAAGCAATGGCAATCTCTCCGAACEST: gi|164199367|gb|ES057066.1|ES057066
genomic: AAACTGATTGAGTGTAAGATGGATCAGATGAACCAAGTTTTAATTGTCAGgcaagtcaca ... tatcttacagCCGCTCTTCCGAACGTGAATTTGGGACAAAGCAATGGCAATCTCTCCGAAC
EST: TGAGTGTAAGATGGATCAGATGAACCAAGTTTTAATTGTCAG CCGCTCTTCCGAACGTGAATTTGGGACAAAGCAATGGCAATCTCTCCGAACEST: gi|164207801|gb|ES029080.1|ES029080
genomic: TGAGTGTAAGATGGATCAGATGAACCAAGTTTTAATTGTCAGgcaagtcaca ... tatcttacagCCGCTCTTCCGAACGTGAATTTGGGACAAAGCAATGGCAATCTCTCCGAAC
EST: AAACTGATTGAGTGTAAGATGGATCAGATGAACCAAGTTTTAATTGTCAG CCGCTCTTCCGAACGTGAATEST: gi|125295210|gb|EL309295.1|EL309295
genomic: AAACTGATTGAGTGTAAGATGGATCAGATGAACCAAGTTTTAATTGTCAGgcaagtcaca ... tatcttacagCCGCTCTTCCGAACGTGAAT
EST: ATGGATCAGATGAACCAAGTTTTAATTGTCAG CCGCTCTTCCGAACGTGAATTTGGGACAAAGCAATGGCAATCTCTCCGAAC
genomic: ATGGATCAGATGAACCAAGTTTTAATTGTCAGgcaagtcaca ... tatcttacagCCGCTCTTCCGAACGTGAATTTGGGACAAAGCAATGGCAATCTCTCCGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAATGAACAGGATGTCGAGTTATGGATCGTGAAGGCAATAACTGCAAAACTGATTGAGTGTAAGATGGATCAGATGAACCAAGTTTTAATTGTCAGgcaagtcacacatctattgaaactctgcacttatctaaacgcaacattcattatttgatggtttgattcatatcttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG