1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactacattgttaactcactaactgtttttgctgaaatatgatctcctgatgaatcctgtggtgtttctagGACTTTCCAATGAAGATTGTGTTACGAAGATGAGGTTGTTGTCACTAGTGGATTTGGCCTCAGATGAATCTGGCAAAATACCTTACACCTCGATTAAAGA
species | Arabidopsis thaliana |
transcript | AT3G02200.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCCTACACGGAATTCCAAAATGCAAATTCGGGATTTCTGCAAAGCTATG GACTTTCCAATGAAGATTGTGTTACGEST: gi|125186994|gb|EL201948.1|EL201948
genomic: TGCCTACACGGAATTCCAAAATGCAAATTCGGGATTTCTGCAAAGCTATGgtactacatt ... gtgtttctagGACTTTCCAATGAAGATTGTGTTACG
EST: TGCCTACACGGAATTCCAAAATGCAAATTCGGGATTTCTGCAAAGCTATG GACTTTCCAATGAAGATTGTGTTACGAAGATGAGGTTGTTGTCACTAGTGGEST: gi|125038813|gb|EL111082.1|EL111082
genomic: TGCCTACACGGAATTCCAAAATGCAAATTCGGGATTTCTGCAAAGCTATGgtactacatt ... gtgtttctagGACTTTCCAATGAAGATTGTGTTACGAAGATGAGGTTGTTGTCACTAGTGG
EST: TGCCTACACGGAATTCCAAAATGCAAATTCGGGATTTCTGCAAAGCTATG GACTTTCCAAT
genomic: TGCCTACACGGAATTCCAAAATGCAAATTCGGGATTTCTGCAAAGCTATGgtactacatt ... gtgtttctagGACTTTCCAAT
cactaactgtttttgctgaaatatgatctcctgatgaatcctgtggtgtttctagGACTTTCCAATGAAGATTGTGTTACGAAGATGAGGTTGTTGTCACTAGTGGATTTGGCCTCAGATGAATCTGGCAAAATACCTTACACCTCGATTAAAGA
tgtttct CT-rich tract
aaatatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactacattgttaactcactaactgtttttgctgaaatatgatctcctgatgaatcctgtggtgtttctagGACTTTCCAATGAAGATTGTGTTACGAAGATGAGGTTGTTGTCACTAGTGGATTTGGCCTCAGATGAATCTGGCAAAATACCTTACACCTCGATTAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG