1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaaaactctcctctgcttgcacttaacatgaaatattgagacccttttagtttctcatttttcttttcgttttcagGTAAATGAACAGGATGTCGAGTTATGGATCGTGAAGGCAATAACTGCAAAACTGATTGAGTGTAAGATGGATCAGATGAACCAAGTTTTAATTGTCAG
species | Arabidopsis thaliana |
transcript | AT3G02200.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGATGAATCTGGCAAAATACCTTACACCTCGATTAAAGACACTCTTCAG GTAAATGAACAGGATGTCGAEST: gi|86074648|gb|DR370405.1|DR370405
genomic: CAGATGAATCTGGCAAAATACCTTACACCTCGATTAAAGACACTCTTCAGgtaaaaactc ... tcgttttcagGTAAATGAACAGGATGTCGA
EST: CAGATGAATCTGGCAAAATACCTTACACCTCGATTAAAGACACTCTTCAG GTAAATGAACAGGATGTCGAGTTATGGATCGTGAAGGCAATAACTGCAAAAEST: gi|125250850|gb|EL264935.1|EL264935
genomic: CAGATGAATCTGGCAAAATACCTTACACCTCGATTAAAGACACTCTTCAGgtaaaaactc ... tcgttttcagGTAAATGAACAGGATGTCGAGTTATGGATCGTGAAGGCAATAACTGCAAAA
EST: CAGATGAATCTGGCAAAATACCTTACACCTCGATTAAAGACACTCTTCAG GTAAATGAACAGGATGTCGAGTTATG
genomic: CAGATGAATCTGGCAAAATACCTTACACCTCGATTAAAGACACTCTTCAGgtaaaaactc ... tcgttttcagGTAAATGAACAGGATGTCGAGTTATG
cttaacatgaaatattgagacccttttagtttctcatttttcttttcgttttcagGTAAATGAACAGGATGTCGAGTTATGGATCGTGAAGGCAATAACTGCAAAACTGATTGAGTGTAAGATGGATCAGATGAACCAAGTTTTAATTGTCAG
acttaac putative branch site (score: 3)
cccttttagtttctca putative PPT
atttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaactctcctctgcttgcacttaacatgaaatattgagacccttttagtttctcatttttcttttcgttttcagGTAAATGAACAGGATGTCGAGTTATGGATCGTGAAGGCAATAACTGCAAAACTGATTGAGTGTAAGATGGATCAGATGAACCAAGTTTTAATTGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG