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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGCTTGGGCAACATGGGATCTTATCGCTATGGTGGACGATGGCAAACATGATGGGACTCCAACACACTCTGTAACCTTTGTGTGGAATGGACATGAGgtgactgttgcttcacatgcttttattactttgctgcaattctttatggaactcgtgatctgtagggttgagcaactagcctctgtgttttaagttacaccttggtttacag

Basic information

species Arabidopsis thaliana
transcript AT3G01510.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01510.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA16G08030.1 (Glycine max), 5'ss of exon 7
AATTGCTTGGGCAACATGGGATCTTATCGCTATGGTGGACGATGGCAAACATGATGGGACTCCAACACACTCTGTAACCTTTGTGTGGAATGGACATGAGgtgactgttgcttcacatgcttttattactttgctgcaattctttatggaac--tcgtgatctgtagggttgagcaactagcctctgtgttttaa-gttacaccttggtttacag
|||||| |||||||||||||||||||| |||||||| ||  |||||| ||| |||||  |||| |||||  |||| || |||||||||||||| |||||||| |        ||| ||   ||   |  | |  |   ||| | | |||||   || ||   ||| ||    | |   |    | |   ||| || || ||              
AATTGCATGGGCAACATGGGATCTTATAGCTATGGTTGAAAATGGCAGACACGATGGACCTCCCACACATGCTGTCACGTTTGTGTGGAATGGTCATGAGgtaagaaaccagtcatatttcttatgttttatattctcatt-tgtgtggaatggtcatgtcatgtgggcacaaacttgtcatatgtagctttcaatgtgac--------------

upper sequence: AT3G01510.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA19G11100.1 (Glycine max), 5'ss of exon 9
AATTGCTTGGGCAACATGGGATCTTATCGCTATGGTGGACGATGGCAAACATGATGGGACTCCAACACACTCTGTAACCTTTGTGTGGAATGGACATGAGgtga-----ctgttgcttcacatgcttttattactttgctgcaattctttatggaactcgtgatctgtagggttgagcaactagcctctgtgttttaagttacaccttggtttacag
|||||| |||||||||||||||||||| |||||||  ||  |||| | |||||||||| |||| |||||  ||||    |||||||||||||| |||||||| |     | ||   ||    | |  ||   | ||||  || | | | | |     |  |||   | ||||||  |  | ||   |||||  | | | ||                
AATTGCATGGGCAACATGGGATCTTATAGCTATGGCTGAAAATGGAAGACATGATGGGCCTCCCACACATGCTGTCGTGTTTGTGTGGAATGGTCATGAGgtaagaaaccggtcagttatagttccatttccattttgtggctagtttatcttttgattctgaa--ggagggttatgagatta-tttctgttatatcatttgt--------------

upper sequence: AT3G01510.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv14s0066g01200.t01 (Vitis vinifera), 5'ss of exon 7
AATTGCTTGGGCAACATGGGATCTTATCGCTATGGTGGACGATGGCAAACATGATGGGACTCCAACACACTCTGTAACCTTTGTGTGGAATGGACATGAGgtgactgttgcttcacatgcttttattactttgctgcaattctttatggaactcgtgatctgtagg-gttgagcaactagcctctgtgttttaagttacaccttggtttacag
||||||||||||||| ||||||||||| || ||||| ||  | |||||||| |||||| || |||| ||  |||| ||||||||||||||||| || |||||   || || ||||  |  ||     | ||| ||     | || ||    ||  | | ||| |     |||| ||      |  || ||    |  || |            
AATTGCTTGGGCAACGTGGGATCTTATAGCCATGGTCGAAAAAGGCAAACACGATGGGCCTGCAACCCATGCTGTGACCTTTGTGTGGAATGGGCACGAGgtatttgatgattca-gtcattactccattttacttttgatattgatt--tcttatcacctgaaatcaatgagtaatccaaattagtcttccttggcactcta----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085869|gb|DR381628.1|DR381628
EST:     ATGATGGGACTCCAACACACTCTGTAACCTTTGTGTGGAATGGACMTGAG                         GGGGAGGAGGTMTTGTTGGTTGGGGATTTCMCAGGAAATTGGAAAGAACCG
genomic: ATGATGGGACTCCAACACACTCTGTAACCTTTGTGTGGAATGGACATGAGgtgactgttg ... tggtttacagGGGGAGGAGGTATTGTTGGTTGGGGATTTCACAGGAAATTGGAAAGAACCG