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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttatccatcttatctctgtcttgaccattaacctgcagaccatggatagcttttctgttttaatgaaaacatcagacaagttatatgtattttttcacagACCTGCAATTGCTTGGGCAACATGGGATCTTATCGCTATGGTGGACGATGGCAAACATGATGGGACTCCAACACACTCTGTAACCTTTGTGTGGAATGGA

Basic information

species Arabidopsis thaliana
transcript AT3G01510.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01510.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA16G08030.1 (Glycine max), 3'ss of exon 6
gtttttatccatcttatctctgtcttgaccattaacctgcagaccatggatagcttttctgttttaatgaaaacatcagacaagttatatgtattttttcacagACCTGCAATTGCTTGGGCAACATGGGATCTTATCGCTATGGTGGACGATGGCAAACATGATGGGACTCCAACACACTCTGTAACCTTTGTGTGGAATGGA
    |  ||| |  | || || | |||| | ||  ||| | |        |   || | |  ||        | |  |  ||  | |||   || |     ||| || |||||||| |||||||||||||||||||| |||||||| ||  |||||| ||| |||||  |||| |||||  |||| || |||||||||||||| 
----tgttcctttgtttccctattttgatccttttccttctgggtccttttgcattctttacttcctcacttagaaaaagcatttcatagagatgtaactgcagGCCGGCAATTGCATGGGCAACATGGGATCTTATAGCTATGGTTGAAAATGGCAGACACGATGGACCTCCCACACATGCTGTCACGTTTGTGTGGAATGGT

upper sequence: AT3G01510.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA19G11100.1 (Glycine max), 3'ss of exon 8
gtttttatccatcttatctctgtcttgaccattaacctgcagaccatggatagcttttctgttttaatgaaaacatcagacaagttatatgtattttttcacagACCTGCAATTGCTTGGGCAACATGGGATCTTATCGCTATGGTGGACGATGGCAAACATGATGGGACTCCAACACACTCTGTAACCTTTGTGTGGAATGGA
     ||||    |  |     | | ||  | |||||  ||   | ||   |  || | |    |       | |  |  ||  | |||   ||||     |||||| |||||||| |||||||||||||||||||| |||||||  ||  |||| | |||||||||| |||| |||||  ||||    |||||||||||||| 
----gtatcaccgtgcttgacctttagaataataaccatcatttcctgataattttctattaactctcacttagaaaaagcatttcatagtgatttaactgcagACCGGCAATTGCATGGGCAACATGGGATCTTATAGCTATGGCTGAAAATGGAAGACATGATGGGCCTCCCACACATGCTGTCGTGTTTGTGTGGAATGGT

upper sequence: AT3G01510.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv14s0066g01200.t01 (Vitis vinifera), 3'ss of exon 6
gtttttatccatcttatctctgtcttgaccattaacctgcagaccatggatagcttttctgttttaatgaaaac-atcagacaagttatatgtattttttca--cagACCTGCAATTGCTTGGGCAACATGGGATCTTATCGCTATGGTGGACGATGGCAAACATGATGGGACTCCAACACACTCTGTAACCTTTGTGTGGAATGGA
      |   |    |   | ||  ||| |  |      ||  |  | |  ||   ||   |  | || ||||    || |  |  |  ||| |  | |  |  |||||| ||||||||||||||||| ||||||||||| || ||||| ||  | |||||||| |||||| || |||| ||  |||| ||||||||||||||||| 
------aaagaaaaaagtacagtactgaactatggtaaacat-ctttaggaagaagttggttactgataaaaattgacaaattatattgatggaactctgaatgcagACCAGCAATTGCTTGGGCAACGTGGGATCTTATAGCCATGGTCGAAAAAGGCAAACACGATGGGCCTGCAACCCATGCTGTGACCTTTGTGTGGAATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagcttttctgttttaatgaaaacatcagacaagttatatgtattttttcacagACCTGCAATTGCTTGGGCAACATGGGATCTTATCGCTATGGTGGACGATGGCAAACATGATGGGACTCCAACACACTCTGTAACCTTTGTGTGGAATGGA
            ttttaat  putative branch site (score: 3)
                                          tattttttc  putative PPT
                                aagttatatgtatttt  TA-rich tract