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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaattgtacagtactaggcttctatataacttgttaatgttgttaactaaacattgctggtgactagttaacatgggaagatttagcatggaaacactttgcatatcagtgtttttgaaattttcttttttatttcttccagtttttgatttattcagGAAGATGCTGGTAGAGAAAACTGGATCCTTTAGCCTTGTTCTTGAAAGACCATTCTCTCCCTTTCCCATTCAGTATCTGCTTCATTTGAGCGACCTTGAT

Basic information

species Arabidopsis thaliana
transcript AT3G01510.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01510.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv14s0066g01200.t01 (Vitis vinifera), 3'ss of exon 2
gtaagaattgtacagtactaggcttctatataacttgttaatgttgttaactaaacattgctggtgactagttaacatgggaagatttagcatggaaacactttgcatatcagtgtttttgaaattttcttttttatttcttccagtttttgatttattcagGAAGATGCTGGTAGAGAAAACTGGATCCTTTAGCCTTGTTCTTGAAAGACCATTCTCTCCCTTTCCCATTCAGTATCTGCTTCATTTGAGCGACCTTGAT
                                                          |  |  |    | | |  |    |  | ||    |   |||  ||   |  |   | | ||    | |||| ||||||||| ||  |||||||| |||  |||||||||||||||   ||||||| ||||| ||||| || |||||||| || || |||||||| ||||| |||||  | |||| ||   |||| || ||||||
----------------------------------------------------------ttttttttttcaatcagaa--aaatcactttatgttttaactgttgaaagttggttctgttcattactttcatttttatttttt--agtttttggtttcctcagGAAGATGCTGGAGCAGAAAACAGGATCTTTTAGTCTCGTTCTTGAGAGGCCCTTCTCTCCTTTTCCAATTCAACAACTGCATCTAATGAGTGATCTTGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcagtgtttttgaaattttcttttttatttcttccagtttttgatttattcagGAAGATGCTGGTAGAGAAAACTGGATCCTTTAGCCTTGTTCTTGAAAGACCATTCTCTCCCTTTCCCATTCAGTATCTGCTTCATTTGAGCGACCTTGAT
                                        ttttgat  putative branch site (score: 4)
                                              tttattc  CT-rich tract
      tgtttttgaaattttc  TA-rich tract