1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtagtaactcttaatcgatacatggagtgtgagtgttgaaagttgcctctttaattattgggctttcatgatgtctctataggtatggaaagCTTTACTTGAAACTCGCAAAGAGCTACATAGAAAAAGGTTCAGACTATGCTAGCAAAGAAACGGAGAGGCTTGGACGGGTGCTTGGGAAGTCGATAAGTC
species | Arabidopsis thaliana |
transcript | AT2G47470.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGGAA AEST: gi|301502106|gb|HO207646.1|HO207646
genomic: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGTTAgtagtaactc ... gtatggaaag-
EST: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGGAA AEST: gi|301502106|gb|HO207646.1|HO207646
genomic: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGTTAgtagtaactc ... gtatggaaag-
EST: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGGAA AEST: gi|86080467|gb|DR376224.1|DR376224
genomic: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGTTAgtagtaactc ... gtatggaaag-
EST: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGGAA AEST: gi|86080467|gb|DR376224.1|DR376224
genomic: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGTTAgtagtaactc ... gtatggaaag-
EST: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGGAA AEST: gi|86080467|gb|DR376224.1|DR376224
genomic: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGTTAgtagtaactc ... gtatggaaag-
EST: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGGAA AEST: gi|86076404|gb|DR372161.1|DR372161
genomic: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGTTAgtagtaactc ... gtatggaaag-
EST: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGGAA AEST: gi|86076404|gb|DR372161.1|DR372161
genomic: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGTTAgtagtaactc ... gtatggaaag-
EST: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGGAA AEST: gi|86076404|gb|DR372161.1|DR372161
genomic: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGTTAgtagtaactc ... gtatggaaag-
EST: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGGAA AEST: gi|116441307|gb|EG483899.1|EG483899
genomic: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGTTAgtagtaactc ... gtatggaaag-
EST: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGGAA AEST: gi|116441307|gb|EG483899.1|EG483899
genomic: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGTTAgtagtaactc ... gtatggaaag-
EST: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGGAA AEST: gi|116441307|gb|EG483899.1|EG483899
genomic: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGTTAgtagtaactc ... gtatggaaag-
EST: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGGAA A
genomic: CATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGTTAgtagtaactc ... gtatggaaag-
gaaagttgcctctttaattattgggctttcatgatgtctctataggtatggaaagCTTTACTTGAAACTCGCAAAGAGCTACATAGAAAAAGGTTCAGACTATGCTAGCAAAGAAACGGAGAGGCTTGGACGGGTGCTTGGGAAGTCGATAAGTC
ctttaat putative branch site (score: 4)
tctttaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtaactcttaatcgatacatggagtgtgagtgttgaaagttgcctctttaattattgggctttcatgatgtctctataggtatggaaagCTTTACTTGAAACTCGCAAAGAGCTACATAGAAAAAGGTTCAGACTATGCTAGCAAAGAAACGGAGAGGCTTGGACGGGTGCTTGGGAAGTCGATAAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG