1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGCAGTTCCACAAAACGTGGTTGTTTTGACACCTGACAATTTCGATGAGATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATGgtaaccatacttgttatctctctcctcaccgtcatggttttgctttcatgctgctatcttctaatatcaattttccatcttccag
species | Arabidopsis thaliana |
transcript | AT2G47470.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATG GTGTGGCCACTGCAAATCACTCGCTCCCEST: gi|301501187|gb|HO206727.1|HO206727
genomic: ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATGgtaaccatac ... catcttccagGTGTGGCCACTGCAAATCACTCGCTCCC
EST: ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATG GTGTGGCCACTGCAAATCACTCGCTCCCEST: gi|116441307|gb|EG483899.1|EG483899
genomic: ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATGgtaaccatac ... catcttccagGTGTGGCCACTGCAAATCACTCGCTCCC
EST: AAAGATGTCCTAGTCGAATTTTATGCACCATG GTGCGGCCACTGCAAATCACTCGCTCCCEST: gi|116441306|gb|EG483898.1|EG483898
genomic: AAAGATGTCCTAGTCGAATTTTATGCACCATGgtaaccatac ... catcttccagGTGTGGCCACTGCAAATCACTCGCTCCC
EST: ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATG GTGCGGCCACTGCAAATCACTCGCTCCCEST: gi|125183428|gb|EL198382.1|EL198382
genomic: ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATGgtaaccatac ... catcttccagGTGTGGCCACTGCAAATCACTCGCTCCC
EST: ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATG GTGTGGCCACTGCAAATC
genomic: ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATGgtaaccatac ... catcttccagGTGTGGCCACTGCAAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCAGTTCCACAAAACGTGGTTGTTTTGACACCTGACAATTTCGATGAGATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATGgtaaccatacttgttatctctctcctcaccgtcatggttttgctttcatgctgctatcttctaatatcaattttccatcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG