1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTATGAGGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGAAGGAGgtatgatagtagctaagcttgtatcatttcggattatagatatttacttttgtgggaaacttgttttagcttggtttatgactaaaatttagttggcgac...
species | Arabidopsis thaliana |
transcript | AT2G47470.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGAAGGAG GCACCAACGTAAAATTAGCTGCAGTTCCAEST: gi|164228010|gb|ES057155.1|ES057155
genomic: GGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGAAGGAGgtatgatagt ... tatgtttcagGCACCAACGTAAAATTAGCTGCAGTTCCA
EST: CAAGGAAGGAG GCACCAACGTAAAATTAGCTGCAGTTCCACAAAACGTGGTTGTTTTGACACEST: gi|125248627|gb|EL262712.1|EL262712
genomic: CAAGGAAGGAGgtatgatagt ... tatgtttcagGCACCAACGTAAAATTAGCTGCAGTTCCACAAAACGTGGTTGTTTTGACAC
EST: AATGCTGAAGCTTTGGCTGAATACGTGAACAAGGAAGGAG GCACCAACGTAAAATTAGCTGCAGTTCCAEST: gi|301501187|gb|HO206727.1|HO206727
genomic: AATGCTGAAGCTTTGGCTGAATACGTGAACAAGGAAGGAGgtatgatagt ... tatgtttcagGCACCAACGTAAAATTAGCTGCAGTTCCA
EST: GGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGAAGGAG GCACCAACGTAAAATTAGCTGCAGTTCCACAAAAACGTGGTTGTTTTGACAEST: gi|116441306|gb|EG483898.1|EG483898
genomic: GGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGAAGGAGgtatgatagt ... tatgtttcagGCACCAACGTAAAATTAGCTGCAGTTCCACAAAA-CGTGGTTGTTTTGACA
EST: GGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGAAGGAG GCACCAACGTAAAATTAGCTGCAGTTCCACAAA-CGTGGTTGTTTTGACACEST: gi|164083473|gb|ES106372.1|ES106372
genomic: GGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGAAGGAGgtatgatagt ... tatgtttcagGCACCAACGTAAAATTAGCTGCAGTTCCACAAAACGTGGTTGTTTTGACAC
EST: GGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGAAGGAG GCACCAACGTAAAATTAGCTAGCAGTTCCACAAAACGTGGTTGTTTTG
genomic: GGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGAAGGAGgtatgatagt ... tatgtttcagGCACCAACGTAAAATTAGCT-GCAGTTCCACAAAACGTGGTTGTTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGAGGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGAAGGAGgtatgatagtagctaagcttgtatcatttcggattatagatatttacttttgtgggaaacttgttttagcttggtttatgactaaaatttagttggcgac
- - - - - - - - ATGCTG
- - - - - - - - - - CTGAAG
- - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG