1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTATGACGGTGGCAGGGATTTAGATGACTTTGTAAGCTTCATCAACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGGTTCGgtaaaaacatgtcttctgcagaatcaccatttcccactaaaaattgaaaacttatgttgattctatcacactctcaatag
species | Arabidopsis thaliana |
transcript | AT2G47470.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAA-----G GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCTEST: gi|86076404|gb|DR372161.1|DR372161
genomic: AAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGGTTCGgtaaaaacat ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT
EST: AAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAA-----G GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCTEST: gi|86080467|gb|DR376224.1|DR376224
genomic: AAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGGTTCGgtaaaaacat ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT
EST: AAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAA-----G GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCTEST: gi|116441307|gb|EG483899.1|EG483899
genomic: AAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGGTTCGgtaaaaacat ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT
EST: AAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAA-----G GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCTEST: gi|116441306|gb|EG483898.1|EG483898
genomic: AAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGGTTCGgtaaaaacat ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT
EST: AAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGG--C- --TGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAAGAGTTAGTTGCAGC
genomic: AAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGGTTCGgtaaaaacat ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAA-GAGTTAGTTGCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTATGACGGTGGCAGGGATTTAGATGACTTTGTAAGCTTCATCAACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGGTTCGgtaaaaacatgtcttctgcagaatcaccatttcccactaaaaattgaaaacttatgttgattctatcacactctcaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT