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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATTGTGATGAGCAAAAGAGTGTCTGTACTAAATATGGTGTTAGTGGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAAgtatgctttttactgtttattctctctaagcagattacttatttggtggatgtcttttgtttatagatagtgaatgattttgtttgttttttctgttcatcttattgaatag

Basic information

species Arabidopsis thaliana
transcript AT2G47470.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G47470.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G24520.1 (Glycine max), 5'ss of exon 4
GTTGATTGTGATGAGCAAAAGAGTGTCTGTACTAAATATGGTGTTAGTGGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAAgt----atgctttttactgtt----tattctctctaagcagatta----cttatttggtggatgtcttttgtttatagatagtgaatgattttgtttgttttttctg-ttcatcttattgaatag------
||||| ||||||||||| |||||| | || |  |||||||| ||   ||| |||||||| |||||||||||||| |||||||||||||||||  ||||||    |   ||||  || ||    |||    |  |  ||  ||     |||| ||  | | | | |     | ||   |  |  || |||   ||||  ||   |  || || ||    |||        
GTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagatttttgtctattggaatataacattgacacaattttatatcttaattcatagttatttacctgtcatttctcatttatcattccttttgcattcaatacttgattttggaaaattcccatag

upper sequence: AT2G47470.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G01750.1 (Glycine max), 5'ss of exon 3
GTTGATTGTGATGAGCAAAAGAGTGTCTGTACTAAATATGGTGTTAGTGGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAAgt----atgctttttactgtt----tattctctctaagcagatta----cttatttggtggatgtcttttgtttatagatagtgaatgattttgtttgttttttctg-ttcatcttattgaatag------
||||| ||||||||||| |||||| | || |  |||||||| ||   ||| |||||||| |||||||||||||| |||||||||||||||||  ||||||    |   ||||  || ||    |||    |  |  ||  ||     |||| ||  | | | | |     | ||      |  || |||   ||||  ||   |  || || ||    |||        
GTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagatttttgtctattggaatataacattgacacaattttatatcttaattcatagttatttacctgtcatttcacatttatcattccttttgcattcaatacttgattttggaaaattcccatag

upper sequence: AT2G47470.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G01820.1 (Glycine max), 5'ss of exon 4
GTTGATTGTGATGAGCAAAAGAGTGTCTGTACTAAATATGGTGTTAGTGGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAAgt------atgctttttactgtttattctctctaagcagattacttat-----ttggtggatgtcttttgtttatagatagtgaatgattttgtttgttttttctgttc-atcttattgaatag------
||||| ||||||||||| |||||| | || |  || ||||| ||   ||| |||||||| |||||||||||||| ||||||||||||||| |  ||||||      ||  | | || ||     |  |    ||  ||||   |||     ||  | | | | |     | ||      |  || |||   ||||  ||   | ||  || ||    |||        
GTTGACTGTGATGAGCATAAGAGTTTGTGCAGCAAGTATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAAgtgaggagatcttctctattggaatataacatggagacgattttatatctcaattcatagttatttacctgtcatttcacatctatcattccttttgcattcaatatttgattttggaaaattcccatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125301792|gb|EL315877.1|EL315877
EST:     ATCTCTTGAACCTCAAAA                         GTATGAGGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGA
genomic: ATCTCTTGAACCTCAAAAgtatgctttt ... tattgaatagGTATGAGGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGA
EST: gi|164077066|gb|ES089212.1|ES089212
EST:     GGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAA                         GTATGAGGGTCCAC
genomic: GGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAAgtatgctttt ... tattgaatagGTATGAGGGTCCAC
EST: gi|116441306|gb|EG483898.1|EG483898
EST:     GGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAA                         GTATGAGGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGA
genomic: GGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAAgtatgctttt ... tattgaatagGTATGAGGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGA
EST: gi|301501187|gb|HO206727.1|HO206727
EST:     GGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAA                         GTATGAGGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGA
genomic: GGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAAgtatgctttt ... tattgaatagGTATGAGGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGA
EST: gi|164227263|gb|EL970918.1|EL970918
EST:     GGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAA                         GTATGAGGGTCC
genomic: GGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAAgtatgctttt ... tattgaatagGTATGAGGGTCC