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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGCCACTGCAAATCACTCGCTCCCgtaagctcaactatctgtttactcttattatagatatatagtcatctatgcttcataactaatgcttttttctttgtattatcag

Basic information

species Arabidopsis thaliana
transcript AT2G47470.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116441307|gb|EG483899.1|EG483899
EST:     GTGCGGCCACTGCAAATCACTCGCTCCC                         ACATACGAAAAGGTAGCCACAGTGTTTAACCAGGAAGAAGGTGTAGTCATC
genomic: GTGTGGCCACTGCAAATCACTCGCTCCCgtaagctcaa ... gtattatcagACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATC
EST: gi|116441306|gb|EG483898.1|EG483898
EST:     GTGCGGCCACTGCAAATCACTCGCTCCC                         ACATACGAAAAGGTAGCCACAGTGTTTAACCAGGAAGAAGGTGTAGTCATC
genomic: GTGTGGCCACTGCAAATCACTCGCTCCCgtaagctcaa ... gtattatcagACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATC
EST: gi|124917298|gb|EH991172.1|EH991172
EST:     GTGTGGCCACTGCAAATCACTCGCTCCC                         ACATACGAAAAGGTAG
genomic: GTGTGGCCACTGCAAATCACTCGCTCCCgtaagctcaa ... gtattatcagACATACGAAAAGGTAG
EST: gi|164056563|gb|ES074795.1|ES074795
EST:     GCAAATCACTCGCTCCC                         ACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATC
genomic: GCAAATCACTCGCTCCCgtaagctcaa ... gtattatcagACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATC
EST: gi|301501187|gb|HO206727.1|HO206727
EST:     GTGTGGCCACTGCAAATCACTCGCTCCC                         ACATACGAAAAGGTAGCCACAGTGTTTAAACA
genomic: GTGTGGCCACTGCAAATCACTCGCTCCCgtaagctcaa ... gtattatcagACATACGAAAAGGTAGCCACAGTGTTTAAACA
EST: gi|125282394|gb|EL296479.1|EL296479
EST:     CTGCAAATCACTCGCTCCC                         ACATACG-AAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATC
genomic: CTGCAAATCACTCGCTCCCgtaagctcaa ... gtattatcagACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATC
EST: gi|124963405|gb|EL037743.1|EL037743
EST:     CATGGTGTGGCCACTGCAAATCACTCGCTCCC                         ACATACGAAAAGGTAGCCACAGTGTTTA
genomic: CATGGTGTGGCCACTGCAAATCACTCGCTCCCgtaagctcaa ... gtattatcagACATACGAAAAGGTAGCCACAGTGTTTA