1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCACGATTATGACGGTGGCAGGGATTTAGATGACTTTGTAAGCTTCATCAACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaaaacatgtcttctgcagaatcaccatttcccactaaaaattgaaaacttatgttgattctatcacactctcaatag
species | Arabidopsis thaliana |
transcript | AT2G47470.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGTAAAGGGCAGCTTACTTCAAAG GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCTEST: gi|164181519|gb|ES211671.1|ES211671
genomic: AGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT
EST: GGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAG GCTGGTATAGTCGAAAGCTTTAGATGCTTTGGTAGAAGAGTTAGTTGCAGCEST: gi|301502106|gb|HO207646.1|HO207646
genomic: GGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTT-AGATGCTTTGGTAAAAGAGTTAGTTGCAGC
EST: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAG GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCTEST: gi|116441307|gb|EG483899.1|EG483899
genomic: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT
EST: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAG GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCTEST: gi|124775466|gb|EH865595.1|EH865595
genomic: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT
EST: AGGGACAGTAGAGGGCAGCTTACTTCAAAG GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCTEST: gi|124919149|gb|EH992929.1|EH992929
genomic: AGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT
EST: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAG GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGEST: gi|86080467|gb|DR376224.1|DR376224
genomic: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTG
EST: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAG GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCTEST: gi|86076404|gb|DR372161.1|DR372161
genomic: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT
EST: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAG GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCTEST: gi|116441306|gb|EG483898.1|EG483898
genomic: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT
EST: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAG GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAAGAGTTAGTTGCAGCEST: gi|124930071|gb|EL007555.1|EL007555
genomic: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAA-GAGTTAGTTGCAGC
EST: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAG GCTGGTATAGTCGAAAGCTTAGATGCTEST: gi|164207103|gb|ES165097.1|ES165097
genomic: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCT
EST: GGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAG GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAGAAGAGTTAGTTGCAGCT
genomic: GGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACGATTATGACGGTGGCAGGGATTTAGATGACTTTGTAAGCTTCATCAACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaaaacatgtcttctgcagaatcaccatttcccactaaaaattgaaaacttatgttgattctatcacactctcaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT