1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagctcaactatctgtttactcttattatagatatatagtcatctatgcttcataactaatgcttttttctttgtattatcagACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAA
species | Arabidopsis thaliana |
transcript | AT2G47470.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGTGGCCACTGCAAATCACTCGCTCCC ACATACGAAAAGGTAGEST: gi|116441307|gb|EG483899.1|EG483899
genomic: GTGTGGCCACTGCAAATCACTCGCTCCCgtaagctcaa ... gtattatcagACATACGAAAAGGTAG
EST: GTGCGGCCACTGCAAATCACTCGCTCCC ACATACGAAAAGGTAGCCACAGTGTTTAACCAGGAAGAAGGTGTAGTCATCEST: gi|164056563|gb|ES074795.1|ES074795
genomic: GTGTGGCCACTGCAAATCACTCGCTCCCgtaagctcaa ... gtattatcagACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATC
EST: GCAAATCACTCGCTCCC ACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATCEST: gi|301501187|gb|HO206727.1|HO206727
genomic: GCAAATCACTCGCTCCCgtaagctcaa ... gtattatcagACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATC
EST: GTGTGGCCACTGCAAATCACTCGCTCCC ACATACGAAAAGGTAGCCACAGTGTTTAAACAEST: gi|125282394|gb|EL296479.1|EL296479
genomic: GTGTGGCCACTGCAAATCACTCGCTCCCgtaagctcaa ... gtattatcagACATACGAAAAGGTAGCCACAGTGTTTAAACA
EST: CTGCAAATCACTCGCTCCC ACATACG-AAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATCEST: gi|116441306|gb|EG483898.1|EG483898
genomic: CTGCAAATCACTCGCTCCCgtaagctcaa ... gtattatcagACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATC
EST: GTGCGGCCACTGCAAATCACTCGCTCCC ACATACGAAAAGGTAGCCACAGTGTTTAACCAGGAAGAAGGTGTAGTCATCEST: gi|124963405|gb|EL037743.1|EL037743
genomic: GTGTGGCCACTGCAAATCACTCGCTCCCgtaagctcaa ... gtattatcagACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATC
EST: CATGGTGTGGCCACTGCAAATCACTCGCTCCC ACATACGAAAAGGTAGCCACAGTGTTTA
genomic: CATGGTGTGGCCACTGCAAATCACTCGCTCCCgtaagctcaa ... gtattatcagACATACGAAAAGGTAGCCACAGTGTTTA
tagatatatagtcatctatgcttcataactaatgcttttttctttgtattatcagACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAA
aactaat putative branch site (score: 2)
cttttttctttgtatt CT-rich tract
ttttttctttgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctcaactatctgtttactcttattatagatatatagtcatctatgcttcataactaatgcttttttctttgtattatcagACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT