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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccatacttgttatctctctcctcaccgtcatggttttgctttcatgctgctatcttctaatatcaattttccatcttccagGTGTGGCCACTGCAAATCACTCGCTCCC

Basic information

species Arabidopsis thaliana
transcript AT2G47470.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124917298|gb|EH991172.1|EH991172
EST:     ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATG                         GTGTGGCCACTGCAAATCACTCGCTCCC
genomic: ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATGgtaaccatac ... catcttccagGTGTGGCCACTGCAAATCACTCGCTCCC
EST: gi|116441307|gb|EG483899.1|EG483899
EST:     AAAGATGTCCTAGTCGAATTTTATGCACCATG                         GTGCGGCCACTGCAAATCACTCGCTCCC
genomic: AAAGATGTCCTAGTCGAATTTTATGCACCATGgtaaccatac ... catcttccagGTGTGGCCACTGCAAATCACTCGCTCCC
EST: gi|301501187|gb|HO206727.1|HO206727
EST:     ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATG                         GTGTGGCCACTGCAAATCACTCGCTCCC
genomic: ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATGgtaaccatac ... catcttccagGTGTGGCCACTGCAAATCACTCGCTCCC
EST: gi|116441306|gb|EG483898.1|EG483898
EST:     ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATG                         GTGCGGCCACTGCAAATCACTCGCTCCC
genomic: ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATGgtaaccatac ... catcttccagGTGTGGCCACTGCAAATCACTCGCTCCC
EST: gi|125183428|gb|EL198382.1|EL198382
EST:     ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATG                         GTGTGGCCACTGCAAATC
genomic: ATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATGgtaaccatac ... catcttccagGTGTGGCCACTGCAAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcatggttttgctttcatgctgctatcttctaatatcaattttccatcttccagGTGTGGCCACTGCAAATCACTCGCTCCC
                            ttctaat  putative branch site (score: 2)
                                        ttttccatcttcc  putative PPT
                            ttctaatatcaatttt  TA-rich tract