1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCTATAAATGCTTTGGCATTCAATCCTGATGGGAAGAGgtaaattaacaacatttggattttgattgattgacacaatcctcacatgatgaggttttgagtgtgtgttttggctctctcactgagtttgtggaatgtatatttcag
species | Arabidopsis thaliana |
transcript | AT2G46280.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGTCATTTTGGACCTATAAATGCTTTGGCATTCAATCCTGATGGGAAGAG TTTCTCTAGTGGEST: gi|125081411|gb|EL142644.1|EL142644
genomic: GGTCATTTTGGACCTATAAATGCTTTGGCATTCAATCCTGATGGGAAGAGgtaaattaac ... tatatttcagTTTCTCTAGTGG
EST: GACCTATAAATGCTTTGGCATTCAATCCTGATGGGAAGAG TTTCTCTAGTGGAGGTGAAGACGGTTACGTGAGGCTGCATCATTTTGACTCEST: gi|164037758|gb|ES148773.1|ES148773
genomic: GACCTATAAATGCTTTGGCATTCAATCCTGATGGGAAGAGgtaaattaac ... tatatttcagTTTCTCTAGTGGAGGTGAAGACGGTTACGTGAGGCTGCATCATTTTGACTC
EST: GTCATTTTGGACCTATAAATGCTTTGGCATTCAATCCTGATGGGGAAGAG TTTCTCTAGTGGAGGTGAAGACGGTTACGTGAGGC
genomic: GTCATTTTGGACCTATAAATGCTTTGGCATTCAATCCTGATGGG-AAGAGgtaaattaac ... tatatttcagTTTCTCTAGTGGAGGTGAAGACGGTTACGTGAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCTATAAATGCTTTGGCATTCAATCCTGATGGGAAGAGgtaaattaacaacatttggattttgattgattgacacaatcctcacatgatgaggttttgagtgtgtgttttggctctctcactgagtttgtggaatgtatatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA