Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctcaatttctcttcaaatagtatcgagtcgatgattagattcattgtttccccttagctacaagcttgtttagggtttatagtatcgagtgaattctgtcgtcttagtctttcaaagctgaatgtttagtgatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGTGGGATGTAAAATCTGGAAAAGAATTGTTCACTTTCAAGTTTAATGCCCC

Basic information

species Arabidopsis thaliana
transcript AT2G46280.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86045978|gb|DR341733.1|DR341733
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAACATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043178|gb|DR338933.1|DR338933
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043193|gb|DR338948.1|DR338948
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|116482868|gb|EG525460.1|EG525460
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043174|gb|DR338929.1|DR338929
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|152038507|gb|AV825831.2|AV825831
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|116465389|gb|EG507981.1|EG507981
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043167|gb|DR338922.1|DR338922
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86045976|gb|DR341731.1|DR341731
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|116465388|gb|EG507980.1|EG507980
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATT
EST: gi|116465377|gb|EG507969.1|EG507969
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043172|gb|DR338927.1|DR338927
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043162|gb|DR338917.1|DR338917
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043177|gb|DR338932.1|DR338932
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043163|gb|DR338918.1|DR338918
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|116465378|gb|EG507970.1|EG507970
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043192|gb|DR338947.1|DR338947
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86045980|gb|DR341735.1|DR341735
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86045979|gb|DR341734.1|DR341734
EST:     TGGAACTTACCGTGGTCACAACGGNGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043180|gb|DR338935.1|DR338935
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|164106241|gb|EL994666.1|EL994666
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGT
EST: gi|86043191|gb|DR338946.1|DR338946
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043184|gb|DR338939.1|DR338939
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86045975|gb|DR341730.1|DR341730
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043169|gb|DR338924.1|DR338924
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043175|gb|DR338930.1|DR338930
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|164056579|gb|ES179895.1|ES179895
EST:     TACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCAC
genomic: TACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCAC
EST: gi|86043196|gb|DR338951.1|DR338951
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043161|gb|DR338916.1|DR338916
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043168|gb|DR338923.1|DR338923
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86045981|gb|DR341736.1|DR341736
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAACATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043199|gb|DR338954.1|DR338954
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043189|gb|DR338944.1|DR338944
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|116465379|gb|EG507971.1|EG507971
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86045973|gb|DR341728.1|DR341728
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043171|gb|DR338926.1|DR338926
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043182|gb|DR338937.1|DR338937
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043187|gb|DR338942.1|DR338942
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTRGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043173|gb|DR338928.1|DR338928
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043190|gb|DR338945.1|DR338945
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043165|gb|DR338920.1|DR338920
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043188|gb|DR338943.1|DR338943
EST:     TGGAACTTACCGTGGTCACAACGGTGSTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGNTTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86045977|gb|DR341732.1|DR341732
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043164|gb|DR338919.1|DR338919
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86045974|gb|DR341729.1|DR341729
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043194|gb|DR338949.1|DR338949
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86045972|gb|DR341727.1|DR341727
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043181|gb|DR338936.1|DR338936
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043198|gb|DR338953.1|DR338953
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043176|gb|DR338931.1|DR338931
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCA
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCA
EST: gi|86043195|gb|DR338950.1|DR338950
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043170|gb|DR338925.1|DR338925
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
EST: gi|86043197|gb|DR338952.1|DR338952
EST:     TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCC                         GAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT
genomic: TGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGTCTCCCgtaagtttct ... gatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgagtgaattctgtcgtcttagtctttcaaagctgaatgtttagtgatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGTGGGATGTAAAATCTGGAAAAGAATTGTTCACTTTCAAGTTTAATGCCCC
                                               tttctt  CT-rich tract
                                   aatgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtttctcaatttctcttcaaatagtatcgagtcgatgattagattcattgtttccccttagctacaagcttgtttagggtttatagtatcgagtgaattctgtcgtcttagtctttcaaagctgaatgtttagtgatttcttagGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGTGGGATGTAAAATCTGGAAAAGAATTGTTCACTTTCAAGTTTAATGCCCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA