1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGATGGAAAGAAGAGGATCAATAGAGCTGTTTGGGGTCCCCTGAACCAAACTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAGgtatttcaatttttcttaaggccttacttgtgtattaatttctctcttttaaggttatgaactaaaccttatgtggtgctactgccattgttactag
species | Arabidopsis thaliana |
transcript | AT2G46280.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCNGGGATGCCGAG ACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACAEST: gi|124814958|gb|EH899824.1|EH899824
genomic: CTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAGgtatttcaat ... ttgttactagACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACA
EST: TGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAG ACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACAAGAAGGACEST: gi|164128235|gb|ES092075.1|ES092075
genomic: TGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAGgtatttcaat ... ttgttactagACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACAAGAAGGAC
EST: CTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAG ACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACAEST: gi|86043189|gb|DR338944.1|DR338944
genomic: CTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAGgtatttcaat ... ttgttactagACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACA
EST: CTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAG ACGGGAAAATTGEST: gi|86043164|gb|DR338919.1|DR338919
genomic: CTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAGgtatttcaat ... ttgttactagACGGGAAAATTG
EST: CTATTGNTAGTGGTGGTGAAGATAAAGT-ATCAGAATCTGGGATGCCGAG ACNGGAAA-TTGCTCA-GCAATCAGATGAGGGAGTGGG
genomic: CTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAGgtatttcaat ... ttgttactagACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGGAAAGAAGAGGATCAATAGAGCTGTTTGGGGTCCCCTGAACCAAACTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAGgtatttcaatttttcttaaggccttacttgtgtattaatttctctcttttaaggttatgaactaaaccttatgtggtgctactgccattgttactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA