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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattgcttagattctgattgatctttttctttaacatactgtaactttttaagattgttttgtgcagATTCTACTGTTCTGGCATATGTGTTATCAGAACTAAACAGACGCCACAATTATGGGCTAGACCTCTTTCTCTTGTCCATAGATGAAGGGATTACGGGTTA

Basic information

species Arabidopsis thaliana
transcript AT2G44270.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86056680|gb|DR352437.1|DR352437
EST:     TTTATTCAAATCTGGTGAACGTGTTGCTATAGGTGCCTCTGGTGGAAAAG                         ATTCTACTGTTCTGGCATATGTTTTATCAGAACTAAACAGACGCCACAATT
genomic: TTTATTCAAATCTGGTGAACGTGTTGCTATAGGTGCCTCTGGTGGAAAAGgtgattgctt ... ttttgtgcagATTCTACTGTTCTGGCATATGTGTTATCAGAACTAAACAGACGCCACAATT
EST: gi|86056681|gb|DR352438.1|DR352438
EST:     TTTATTCAAATCTGGTGAACGTGTTGCTATAGGTGCCTCTGGTAGAAAAG                         ATTCTACTGTTCTGGCATATGTGTTATCAGAACTAAACAGACGCCACAATT
genomic: TTTATTCAAATCTGGTGAACGTGTTGCTATAGGTGCCTCTGGTGGAAAAGgtgattgctt ... ttttgtgcagATTCTACTGTTCTGGCATATGTGTTATCAGAACTAAACAGACGCCACAATT
EST: gi|86056682|gb|DR352439.1|DR352439
EST:     TTTATTCAAATCTGGTGAACGTGTTGCTATAGGTGCCTCTGGTAGAAAAG                         ATTCTACTGTTCTGGCATATGTGTTATCAGAACTAAACAGACGCCACAATT
genomic: TTTATTCAAATCTGGTGAACGTGTTGCTATAGGTGCCTCTGGTGGAAAAGgtgattgctt ... ttttgtgcagATTCTACTGTTCTGGCATATGTGTTATCAGAACTAAACAGACGCCACAATT
EST: gi|86056679|gb|DR352436.1|DR352436
EST:     TTTATTCAAATCTGGTGAACGTGTTGCTATAGGTGCCTCTGGTAGAAAAG                         ATTCTACTGTTCTGGCATATGTGTTATCAGAACTAAACAGACGCCACAATT
genomic: TTTATTCAAATCTGGTGAACGTGTTGCTATAGGTGCCTCTGGTGGAAAAGgtgattgctt ... ttttgtgcagATTCTACTGTTCTGGCATATGTGTTATCAGAACTAAACAGACGCCACAATT
EST: gi|86056683|gb|DR352440.1|DR352440
EST:     TTTATTCAAATCTGGTGAACGTGTTGCTATAGGTGCCTCTGGTAGAAAAG                         ATTCTACTGTTCTGGCATATGTGTTATCAGAACTAAACAGACGCCACAATT
genomic: TTTATTCAAATCTGGTGAACGTGTTGCTATAGGTGCCTCTGGTGGAAAAGgtgattgctt ... ttttgtgcagATTCTACTGTTCTGGCATATGTGTTATCAGAACTAAACAGACGCCACAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgattgatctttttctttaacatactgtaactttttaagattgttttgtgcagATTCTACTGTTCTGGCATATGTGTTATCAGAACTAAACAGACGCCACAATTATGGGCTAGACCTCTTTCTCTTGTCCATAGATGAAGGGATTACGGGTTA
                          ctgtaac  putative branch site (score: 3)
                                          ttgtttt  putative PPT
                                 tttttaagattgtttt  TA-rich tract