1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAAAATGGAGGCCAAGAACAAGAAAGCAGTAGCCTCCCGTCTCTGCTGCTTATGCAACCTGAGACGTCCCGTCCTCAAAAGACCTAAAACCCTTCAACAGgtaacttttcaattttttttatttctcttttctcgtagaatctcgttgggttttagctaacatattaagcagaagcttggaacacatttctatactgtta...
species | Arabidopsis thaliana |
transcript | AT2G44270.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TATGCAACCTGAGACGTCCCGTCCTCAAAAGACCTAAAACCCTTCAACAG ATATGCAGAGAGTGCTTTTATGAGGTTTTTGAGGAGGAGATTCATCAAGTCEST: gi|86056681|gb|DR352438.1|DR352438
genomic: TATGCAACCTGAGACGTCCCGTCCTCAAAAGACCTAAAACCCTTCAACAGgtaacttttc ... tgttttaaagATATGCAGAGAGTGCTTTTATGAGGTTTTTGAGGAGGAGATTCATCAAGTC
EST: TATGCAACCTGAGACGTCCCGTCCTCAAAAGACCTAAAACCCTTCAACAG ATATGCAGAGAGTGCTTTTATGAGGTTTTTGAGGAGGAGATTCATCAAGTCEST: gi|86056682|gb|DR352439.1|DR352439
genomic: TATGCAACCTGAGACGTCCCGTCCTCAAAAGACCTAAAACCCTTCAACAGgtaacttttc ... tgttttaaagATATGCAGAGAGTGCTTTTATGAGGTTTTTGAGGAGGAGATTCATCAAGTC
EST: TATGCAACCTGAGACGTCCCGTCCTCAAAAGACCTAAAACCCTTCAACAG ATATGCAGAGAGTGCTTTTATGAGGTTTTTGAGGAGGAGATTCATCAAGTCEST: gi|86056679|gb|DR352436.1|DR352436
genomic: TATGCAACCTGAGACGTCCCGTCCTCAAAAGACCTAAAACCCTTCAACAGgtaacttttc ... tgttttaaagATATGCAGAGAGTGCTTTTATGAGGTTTTTGAGGAGGAGATTCATCAAGTC
EST: TATGCAACCTGAGACGTCCCGTCCTCAAAAGACCTAAAACCCTTCAACAG ATATGCAGAGAGTGCTTTTATGAGGTTTTTGAGGAGGAGATTCATCAAGTCEST: gi|86056683|gb|DR352440.1|DR352440
genomic: TATGCAACCTGAGACGTCCCGTCCTCAAAAGACCTAAAACCCTTCAACAGgtaacttttc ... tgttttaaagATATGCAGAGAGTGCTTTTATGAGGTTTTTGAGGAGGAGATTCATCAAGTC
EST: TATGCAACCTGAGACGTCCCGTCCTCAAAAGACCTAAAACCCTTCAACAG ATATGCAGAGAGTGCTTTTATGAGGTTTTTGAGGAGGAGATTCATCAAGTC
genomic: TATGCAACCTGAGACGTCCCGTCCTCAAAAGACCTAAAACCCTTCAACAGgtaacttttc ... tgttttaaagATATGCAGAGAGTGCTTTTATGAGGTTTTTGAGGAGGAGATTCATCAAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAATGGAGGCCAAGAACAAGAAAGCAGTAGCCTCCCGTCTCTGCTGCTTATGCAACCTGAGACGTCCCGTCCTCAAAAGACCTAAAACCCTTCAACAGgtaacttttcaattttttttatttctcttttctcgtagaatctcgttgggttttagctaacatattaagcagaagcttggaacacatttctatactgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagcagaa