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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccttcacttcttcccattttatttctttgttttttactcgtgggacttcaccgctttccgaaaaactgacttaacaagcaatattagATATGCTAGATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAATTGATTAAGCTCTGATAAGTAAAGATAAAGTAGAAATGTCATGCCAAAA

Basic information

species Arabidopsis thaliana
transcript AT2G42240.1
intron # 9
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116391491|gb|EG434083.1|EG434083
EST:     CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCA                         ATATGCTAGATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAA
genomic: CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCAgtatccttca ... gcaatattagATATGCTAGATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAA
EST: gi|86072036|gb|DR367793.1|DR367793
EST:     CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCA                         ATATGCTAGATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAA
genomic: CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCAgtatccttca ... gcaatattagATATGCTAGATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAA
EST: gi|116391494|gb|EG434086.1|EG434086
EST:     CAAGGCACAGTGCTTTACTCATCCCTCGCTGGGGAAGTTTTGAGGCTGCA                         ATATGCTAGATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAA
genomic: CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCAgtatccttca ... gcaatattagATATGCTAGATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAA
EST: gi|116391424|gb|EG434016.1|EG434016
EST:     CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCA                         ATATGCTAGATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAA
genomic: CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCAgtatccttca ... gcaatattagATATGCTAGATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAA
EST: gi|86072037|gb|DR367794.1|DR367794
EST:     CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCA                         ATATGCTAGATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGCTAGAA
genomic: CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCAgtatccttca ... gcaatattagATATGCTAGATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAA
EST: gi|116391420|gb|EG434012.1|EG434012
EST:     CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCA                         ATATGCTAGATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAA
genomic: CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCAgtatccttca ... gcaatattagATATGCTAGATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttactcgtgggacttcaccgctttccgaaaaactgacttaacaagcaatattagATATGCTAGATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAATTGATTAAGCTCTGATAAGTAAAGATAAAGTAGAAATGTCATGCCAAAA
 tgacttaac  putative branch site 
                                               aatatta  TA-rich tract