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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAGgtcatctgcactacttgagcacatttctagttccttgtgaatgcttagattctgtttctttgttgcacactcttttcttgtacctctgccttgaaaatct...

Basic information

species Arabidopsis thaliana
transcript AT2G42240.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116391480|gb|EG434072.1|EG434072
EST:     GGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAG                         TCAAGGAATTGCTAATGTTGCTGGGAGGGCACCGACTTCTAGAAAACCT
genomic: GGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAGgtcatctgca ... gctcgttcagTCAAGGAATTGCTAATGTTGCTGGGAGGGCACCGACTTCTAGAAAACCT
EST: gi|116391488|gb|EG434080.1|EG434080
EST:     GGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAG                         TCAAGGAATTGCTAATGTTGCTGGGAGGGCACCGACTTCAAGAAAACCT
genomic: GGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAGgtcatctgca ... gctcgttcagTCAAGGAATTGCTAATGTTGCTGGGAGGGCACCGACTTCTAGAAAACCT
EST: gi|116391485|gb|EG434077.1|EG434077
EST:     GGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAG                         TCAAGGAATTGCTAATGTTGCTGGGAGGGCACCGACTTCTAGAAAACCT
genomic: GGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAGgtcatctgca ... gctcgttcagTCAAGGAATTGCTAATGTTGCTGGGAGGGCACCGACTTCTAGAAAACCT
EST: gi|116391481|gb|EG434073.1|EG434073
EST:     GGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAG                         TCAAGGAATTGCTAATGTTGCTGGGAGGGCACCGACTTCTAGAAAACCT
genomic: GGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAGgtcatctgca ... gctcgttcagTCAAGGAATTGCTAATGTTGCTGGGAGGGCACCGACTTCTAGAAAACCT
EST: gi|116391487|gb|EG434079.1|EG434079
EST:     GGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAG                         TCAAGGAATTGCTAATGTTGCTGGGAGGGCACCGACTTCAAGAAAACCT
genomic: GGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAGgtcatctgca ... gctcgttcagTCAAGGAATTGCTAATGTTGCTGGGAGGGCACCGACTTCTAGAAAACCT
EST: gi|86072037|gb|DR367794.1|DR367794
EST:     GGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAG                         TCAAGGAATTGCTAATGTTGCTGGGAGGGCACCGACTTCTAGAAAACCT
genomic: GGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAGgtcatctgca ... gctcgttcagTCAAGGAATTGCTAATGTTGCTGGGAGGGCACCGACTTCTAGAAAACCT
EST: gi|116391483|gb|EG434075.1|EG434075
EST:     GGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAG                         TCAAGGAATTGCTAATGTTGCTGGGAGGGCACCGACTTCTAGAAAACCT
genomic: GGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAGgtcatctgca ... gctcgttcagTCAAGGAATTGCTAATGTTGCTGGGAGGGCACCGACTTCTAGAAAACCT
EST: gi|19876319|gb|AU237150.1|AU237150
EST:     GGAATGAGTAGTTCTGCTTACAACACAATTGGNTATTCACCTGCACAAAG                         TCAAGGAATTGCTAATGTTGCTGGGAGGGCNCCGACTTCTANAAAACCTA
genomic: GGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAGgtcatctgca ... gctcgttcagTCAAGGAATTGCTAATGTTGCTGGGAGGGCACCGACTTCTAGAAAACCTA