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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggtttaagatttcacacttgggctttaagtgccgtcaacatggtttcacgtttctgaaaactcacactgcacattcttgcacgtttgggcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAG

Basic information

species Arabidopsis thaliana
transcript AT2G42240.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116391480|gb|EG434072.1|EG434072
EST:     TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTG                         GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
genomic: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTGgtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
EST: gi|116391488|gb|EG434080.1|EG434080
EST:     TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAGCACTACTACTGAATCTG                         GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
genomic: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTGgtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
EST: gi|116391485|gb|EG434077.1|EG434077
EST:     TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTG                         GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
genomic: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTGgtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
EST: gi|116391481|gb|EG434073.1|EG434073
EST:     TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTG                         GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
genomic: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTGgtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
EST: gi|116391487|gb|EG434079.1|EG434079
EST:     TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAGCACTACTACTGAATCTG                         GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
genomic: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTGgtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
EST: gi|86072037|gb|DR367794.1|DR367794
EST:     CAAGTCTTGGAACACTACTACTGAATCTG                         GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
genomic: CAAGTCTTGGAACACTACTACTGAATCTGgtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
EST: gi|125089756|gb|EL148005.1|EL148005
EST:     TGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTAG                         GTTTTGGCAGCTTTCAAACTCCTGGAATG
genomic: TGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCT-Ggtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATG
EST: gi|116391483|gb|EG434075.1|EG434075
EST:     TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTG                         GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
genomic: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTGgtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
EST: gi|19876319|gb|AU237150.1|AU237150
EST:     TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTG                         GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
genomic: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTGgtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcacgtttctgaaaactcacactgcacattcttgcacgtttgggcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAG
               aactcac  putative branch site (score: 2)