Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgttgaatattttgttaagaatggtgagagagactgagatcgttgcactaaccgagttttatccgcttttggttgttttttctcgtagATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACACCATCATCGACCGTTGTAGAAACTATCGAATATGATAGTTAGATGTGAC

Basic information

species Arabidopsis thaliana
transcript AT2G42130.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116394664|gb|EG437256.1|EG437256
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         ATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tttctcgtagATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA
EST: gi|116394673|gb|EG437265.1|EG437265
EST:     ATCCTTTTGAA-GATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         ATAGTAAGAGATACCGAAGGAGTGCCTGAAAGT-CTAACGAGGATAGAAAC
genomic: ATCCTTT-GAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tttctcgtagATAGTAAGAGATACCGAAGGAGTGCCTGAA-GTTCTAACGAGGATAGAAAC
EST: gi|116394666|gb|EG437258.1|EG437258
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         ATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tttctcgtagATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA
EST: gi|19877874|gb|AU238705.1|AU238705
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         ATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tttctcgtagATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA
EST: gi|116394674|gb|EG437266.1|EG437266
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         ATAGTAAGAGATACCAAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tttctcgtagATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA
EST: gi|116480998|gb|EG523590.1|EG523590
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         ATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tttctcgtagATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA
EST: gi|116480981|gb|EG523573.1|EG523573
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         ATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tttctcgtagATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA
EST: gi|116394672|gb|EG437264.1|EG437264
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         ATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tttctcgtagATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA
EST: gi|116394269|gb|EG436861.1|EG436861
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         ATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tttctcgtagATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgagatcgttgcactaaccgagttttatccgcttttggttgttttttctcgtagATAGTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACACCATCATCGACCGTTGTAGAAACTATCGAATATGATAGTTAGATGTGAC
            cactaac  putative branch site (score: 1)
                                       ttgttttttctcgt  putative PPT
                                       ttgtttttt  TA-rich tract