1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgtaatcgagattttgcagataacaaaagagaatttttttctcaaagtccagaaattgaatgatcatgtttcagctcaattgagtttttcttagtatagGAACAGAGCTCTGTGTGTTTGGAACTGTCAAACTATTTTTGTCCTGAAGCCATCTATGTACAGTTGAAGGATGCTGGAGGCTTTGAGGCTTTAGTTACAG
species | Arabidopsis thaliana |
transcript | AT2G42130.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGCCAGAGAAATGGAGCGCCTTTCTGCTAAGGAATCGCTACTTCTCGCT GAACAGAGCTCTGTGTGTTTGGAACTGTCAAACTATTTTTGTCCTGAAGCCEST: gi|116394673|gb|EG437265.1|EG437265
genomic: ACGCCAGAGAAATGGAGCGCCTTTCTGCTAAGGAATCGCTACTTCTCGCTgtataacttc ... cttagtatagGAACAGAGCTCTGTGTGTTTGGAACTGTCAAACTATTTTTGTCCTGAAGCC
EST: ACGCCAGAGAAATGGAGCGCCTTTCTGCTAAGGAATCGCTACTTCTCGCT GAACAGAGCTCTGTGTGTTTGGAACTGTCAAACTATTTTTGTCCTGAAGCC
genomic: ACGCCAGAGAAATGGAGCGCCTTTCTGCTAAGGAATCGCTACTTCTCGCTgtataacttc ... cttagtatagGAACAGAGCTCTGTGTGTTTGGAACTGTCAAACTATTTTTGTCCTGAAGCC
aagtccagaaattgaatgatcatgtttcagctcaattgagtttttcttagtatagGAACAGAGCTCTGTGTGTTTGGAACTGTCAAACTATTTTTGTCCTGAAGCCATCTATGTACAGTTGAAGGATGCTGGAGGCTTTGAGGCTTTAGTTACAG
tttttctt CT-rich tract
tttttcttagtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtaatcgagattttgcagataacaaaagagaatttttttctcaaagtccagaaattgaatgatcatgtttcagctcaattgagtttttcttagtatagGAACAGAGCTCTGTGTGTTTGGAACTGTCAAACTATTTTTGTCCTGAAGCCATCTATGTACAGTTGAAGGATGCTGGAGGCTTTGAGGCTTTAGTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - gattttg
- - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - tctcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - cagaaat