1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGGCTTTAGTTACAGGGAAAACAACTAATATGCAAAGGATCGATGTTAATGAGAGGATTACGAGTCTAGAGCGGCTTAATCCAACTCCGAGACCAACCACgtaggtccttctttaatcttttggttacaattttttgcttcggttttaggataattgtcttttaactggttcctatagctttccag
species | Arabidopsis thaliana |
transcript | AT2G42130.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGAGGATTACGAGTCTAGAGCGGCTTAATCCAACTCCGAGACCAACCAC GTCTCCTTGTTTCGAAGGCAGGTGGAATTTTGAGTGGTTTGGATCTGGAAGEST: gi|116394673|gb|EG437265.1|EG437265
genomic: GAGAGGATTACGAGTCTAGAGCGGCTTAATCCAACTCCGAGACCAACCACgtaggtcctt ... agctttccagGTCTCCTTGTTTCGAAGGCAGGTGGAATTTTGAGTGGTTTGGATCTGGAAG
EST: GAGAGGATTACGAGTCTAGAGCGGCTTAATCCAACTCCGAGACCAACCAC GTCTCCTTGTTTCGAAGGCAGGTGGAATTTTGAGTGGTTTGGATCTGGAAGEST: gi|116480981|gb|EG523573.1|EG523573
genomic: GAGAGGATTACGAGTCTAGAGCGGCTTAATCCAACTCCGAGACCAACCACgtaggtcctt ... agctttccagGTCTCCTTGTTTCGAAGGCAGGTGGAATTTTGAGTGGTTTGGATCTGGAAG
EST: GAGAGGATTACGAGTCTAGAGCGGCTTAATCCAACTCCGAGACCAACCAC GTCTCCTTGTTTCGAAGGCAGGTGGAATTTTGAGTGGTTTGGATCTGGAAGEST: gi|125294123|gb|EL308208.1|EL308208
genomic: GAGAGGATTACGAGTCTAGAGCGGCTTAATCCAACTCCGAGACCAACCACgtaggtcctt ... agctttccagGTCTCCTTGTTTCGAAGGCAGGTGGAATTTTGAGTGGTTTGGATCTGGAAG
EST: TTACGAGTCTAGAGCGGCTTAATCCAACTCCGAGACCAACCAC GTCTCCTTGTTTCGAAGGCAGGTGGAATTTTGAGTGGTTTGGATCTGGAAG
genomic: TTACGAGTCTAGAGCGGCTTAATCCAACTCCGAGACCAACCACgtaggtcctt ... agctttccagGTCTCCTTGTTTCGAAGGCAGGTGGAATTTTGAGTGGTTTGGATCTGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCTTTAGTTACAGGGAAAACAACTAATATGCAAAGGATCGATGTTAATGAGAGGATTACGAGTCTAGAGCGGCTTAATCCAACTCCGAGACCAACCACgtaggtccttctttaatcttttggttacaattttttgcttcggttttaggataattgtcttttaactggttcctatagctttccag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT