1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgttgaatattttgttaagaatggtgagagagactgagatcgttgcactaaccgagttttatccgcttttggttgttttttctcgtagatag
species | Arabidopsis thaliana |
transcript | AT2G42130.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTATEST: gi|116394666|gb|EG437258.1|EG437258
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC-T-Tgtaagtttgt ... tcgtagata
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTATEST: gi|116394666|gb|EG437258.1|EG437258
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC-T-Tgtaagtttgt ... tcgtagata
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTATEST: gi|116480981|gb|EG523573.1|EG523573
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC-T-Tgtaagtttgt ... tcgtagata
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT AEST: gi|116480981|gb|EG523573.1|EG523573
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT AEST: gi|116394674|gb|EG437266.1|EG437266
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT AEST: gi|116394674|gb|EG437266.1|EG437266
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT AEST: gi|116394269|gb|EG436861.1|EG436861
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT AEST: gi|116394269|gb|EG436861.1|EG436861
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT AEST: gi|116394664|gb|EG437256.1|EG437256
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT AEST: gi|116394664|gb|EG437256.1|EG437256
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT AEST: gi|116394675|gb|EG437267.1|EG437267
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT AEST: gi|116394675|gb|EG437267.1|EG437267
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT AEST: gi|116480998|gb|EG523590.1|EG523590
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT AEST: gi|116480998|gb|EG523590.1|EG523590
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT AEST: gi|116394667|gb|EG437259.1|EG437259
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: -ATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT AEST: gi|116394667|gb|EG437259.1|EG437259
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: -ATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT AEST: gi|19877874|gb|AU238705.1|AU238705
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT AEST: gi|19877874|gb|AU238705.1|AU238705
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgttgaatattttgttaagaatggtgagagagactgagatcgttgcactaaccgagttttatccgcttttggttgttttttctcgtagatag
- - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAGA