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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACAGCTAAAAAGCGCTTTGGGACAAGCTGCCACAACGTTGCAGCAGCTTCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctactttatccattttttatacatttaaccattttccgctcaaatctgcactgaaccaactagtgatgtttgcttcag

Basic information

species Arabidopsis thaliana
transcript AT2G42130.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116394666|gb|EG437258.1|EG437258
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|124913284|gb|EH987158.1|EH987158
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTT
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTT
EST: gi|116480981|gb|EG523573.1|EG523573
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|116394267|gb|EG436859.1|EG436859
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCC-TTA                         GTGGATCCTTTGAAAGATTTT-CATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|116394674|gb|EG437266.1|EG437266
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|116394269|gb|EG436861.1|EG436861
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|116394664|gb|EG437256.1|EG437256
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|116394675|gb|EG437267.1|EG437267
EST:     CCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAAGA-TTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: CCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGA-GAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|116480998|gb|EG523590.1|EG523590
EST:     TCCTGCTTTTATCAAGGATACTCTAGCCAGTGGTTTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|116394667|gb|EG437259.1|EG437259
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTG-ATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|125275565|gb|EL289650.1|EL289650
EST:     TTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|116394268|gb|EG436860.1|EG436860
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAGAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|19877874|gb|AU238705.1|AU238705
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|116394271|gb|EG436863.1|EG436863
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAAT-CCCCTTA                         GTGGATCCTTTGA
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGA