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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgttgaatattttgttaagaatggtgagagagactgagatcgttgcactaaccgagttttatccgcttttggttgttttttctcgtagatagTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACACCATCATCGACCGTTGTAGAAACTATCGAATATGATAGTTAGATGTGACTAGC

Basic information

species Arabidopsis thaliana
transcript AT2G42130.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116394666|gb|EG437258.1|EG437258
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTAT                        
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC-T-Tgtaagtttgt ... tcgtagata
EST: gi|116394666|gb|EG437258.1|EG437258
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTAT                        
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC-T-Tgtaagtttgt ... tcgtagata
EST: gi|116394666|gb|EG437258.1|EG437258
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTAT                        
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC-T-Tgtaagtttgt ... tcgtagata
EST: gi|116480981|gb|EG523573.1|EG523573
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: gi|116480981|gb|EG523573.1|EG523573
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: gi|116394674|gb|EG437266.1|EG437266
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: gi|116394674|gb|EG437266.1|EG437266
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: gi|116394269|gb|EG436861.1|EG436861
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: gi|116394269|gb|EG436861.1|EG436861
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: gi|116394664|gb|EG437256.1|EG437256
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: gi|116394664|gb|EG437256.1|EG437256
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: gi|116394675|gb|EG437267.1|EG437267
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: gi|116394675|gb|EG437267.1|EG437267
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: gi|116480998|gb|EG523590.1|EG523590
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: gi|116480998|gb|EG523590.1|EG523590
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: gi|116394667|gb|EG437259.1|EG437259
EST:     -ATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: gi|116394667|gb|EG437259.1|EG437259
EST:     -ATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: gi|19877874|gb|AU238705.1|AU238705
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-
EST: gi|19877874|gb|AU238705.1|AU238705
EST:     GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT                         A
genomic: GATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTTgtaagtttgt ... tcgtagatag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcgttgcactaaccgagttttatccgcttttggttgttttttctcgtagatagTAAGAGATACCGAAGGAGTGCCTGAAGTTCTAACGAGGATAGAAACACCATCATCGACCGTTGTAGAAACTATCGAATATGATAGTTAGATGTGACTAGC
        cactaac  putative branch site (score: 1)
                                   ttgttttttctcgt  putative PPT
                                   ttgtttttt  TA-rich tract