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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGTTTTGTTGTCTCTTTGAAGATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAGgtacttttcttgcttaacaaggttgcttgattcttctctcaaacttgtacaaatctctcttatttgctgttttttttttttttttttggtgtaaaag

Basic information

species Arabidopsis thaliana
transcript AT2G40910.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116388248|gb|EG430840.1|EG430840
EST:     ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAG                         AGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
genomic: ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAGgtacttttct ... ggtgtaaaagAGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
EST: gi|116388257|gb|EG430849.1|EG430849
EST:     ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGTACACGAG                         AGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
genomic: ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAGgtacttttct ... ggtgtaaaagAGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
EST: gi|116388231|gb|EG430823.1|EG430823
EST:     ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAG                         AGAGAAGAAAATACACGTGCGAGATTCCTCCGGAACTCTTGATGGAAATTG
genomic: ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAGgtacttttct ... ggtgtaaaagAGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
EST: gi|116388250|gb|EG430842.1|EG430842
EST:     ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAG                         AGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
genomic: ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAGgtacttttct ... ggtgtaaaagAGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
EST: gi|116388255|gb|EG430847.1|EG430847
EST:     ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGTACACGAG                         AGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
genomic: ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAGgtacttttct ... ggtgtaaaagAGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG