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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaatacgcttcctttatgcaatctccctaattcgtagtttttccttgggatcaatggcttggcttagtttgttgtatttatgtactgcatgaaagtttgaatttttacttcccttttcatgttattgttttgagTTTCCAATTGCTGTTTTGTTGTCTCTTTGAAGATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAG

Basic information

species Arabidopsis thaliana
transcript AT2G40910.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116388248|gb|EG430840.1|EG430840
EST:     GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAGCTTCAG                         TTTCCAATTGCTGTTTTGTTGTCTCTCTGAAGATAATGGATGAAAAAGGAG
genomic: GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGgtataaatac ... ttgttttgagTTTCCAATTGCTGTTTTGTTGTCTCTTTGAAGATAATGGATGAAAAAGGAG
EST: gi|116388250|gb|EG430842.1|EG430842
EST:     GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAGCTTCAG                         TTTCCAATTGCTGTTTTGTTGTCTCTCTGAAGATAATGGATGAAAAAGGAG
genomic: GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGgtataaatac ... ttgttttgagTTTCCAATTGCTGTTTTGTTGTCTCTTTGAAGATAATGGATGAAAAAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtactgcatgaaagtttgaatttttacttcccttttcatgttattgttttgagTTTCCAATTGCTGTTTTGTTGTCTCTTTGAAGATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAG
                                             ttgtttt  CT-rich tract
            aaagtttgaattttta  TA-rich tract