Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116388248|gb|EG430840.1|EG430840EST: ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAG AGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
genomic: ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAGgtacttttct ... ggtgtaaaagAGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
EST:
gi|116388257|gb|EG430849.1|EG430849EST: ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGTACACGAG AGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
genomic: ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAGgtacttttct ... ggtgtaaaagAGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
EST:
gi|116388231|gb|EG430823.1|EG430823EST: ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAG AGAGAAGAAAATACACGTGCGAGATTCCTCCGGAACTCTTGATGGAAATTG
genomic: ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAGgtacttttct ... ggtgtaaaagAGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
EST:
gi|116388250|gb|EG430842.1|EG430842EST: ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAG AGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
genomic: ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAGgtacttttct ... ggtgtaaaagAGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
EST:
gi|116388255|gb|EG430847.1|EG430847EST: ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGTACACGAG AGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
genomic: ATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAGgtacttttct ... ggtgtaaaagAGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttgtacaaatctctcttatttgctgttttttttttttttttttggtgtaaaagAGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTGTTATGAGATTGCCAGCAAAGTCCATGGTGAGGTTCAAATGCATCTCCAA
tctctcttatttgctg CT-rich tract
tcttatttgctgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacttttcttgcttaacaaggttgcttgattcttctctcaaacttgtacaaatctctcttatttgctgttttttttttttttttttggtgtaaaagAGAGAAGAAAATACACGTGCGAGATTCCTCCGGATCTCTTGATGGAAATTGTTATGAGATTGCCAGCAAAGTCCATGGTGAGGTTCAAATGCATCTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG