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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAACGTTACAGTCTTTAGCCCTAGCCTTCGTAATGGAACACAATCCTTCTGCTTTGAACATCGGTTTTGACATGAACCTTCTCGCTTCTGCCTACGCGgttcgtcctttatttcatcatgccactttcacaaataacaaaaagatcagtttacaaaaatattgatactaacattgtgattggtaacggttacag

Basic information

species Arabidopsis thaliana
transcript AT2G40900.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124715636|gb|EH807038.1|EH807038
EST:     CATCGGTTTTGACATGAACCTTCTCGCTTCTGCCTACGCG                         GGAATAATGTCGTCGAGCATAGCTTACTACGTTCAAGGACTTATGATGC
genomic: CATCGGTTTTGACATGAACCTTCTCGCTTCTGCCTACGCGgttcgtcctt ... acggttacagGGAATAATGTCGTCGAGCATAGCTTACTACGTTCAAGGACTTATGATGC
EST: gi|116474959|gb|EG517551.1|EG517551
EST:     CTGCTTTGAACATCGGTTTTGACATGAACCTTCTCGCTTCTGCCTACGCG                         GGAATAATGTCGTCGAGCATAGCTTACTACGTTCAAGGACTTATGATGCAG
genomic: CTGCTTTGAACATCGGTTTTGACATGAACCTTCTCGCTTCTGCCTACGCGgttcgtcctt ... acggttacagGGAATAATGTCGTCGAGCATAGCTTACTACGTTCAAGGACTTATGATGCAG