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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatacaaaaagcaacttttttattatttacatttattcatttaaccaaagaaaaagatacgttttattatattttggtacgtggatatgcaccaattcaaaagtagatgtatagtagtacaattagtgtatgacgatcgatgtcataaattatgaatattgatgtgtgtgttttatgtaaatatttgttttaaagGATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCTGGTAAAAGTGATGGGGACGTTAGTGACAGTGGTTGGATCCATATTGATGATATTCTACAAAGGT

Basic information

species Arabidopsis thaliana
transcript AT2G40900.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474959|gb|EG517551.1|EG517551
EST:     GTTAGCAACATCGTGCCTGCAATTACCATTATCCTTGCCACACTTTTCAG                         GATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCTGGTAAAAGCGATGGG
genomic: GTTAGCAACATCGTGCCTGCAATTACCATTATCCTTGCCACACTTTTCAGgtaacataca ... tgttttaaagGATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCTGGTAAAAGTGATGGG
EST: gi|116474958|gb|EG517550.1|EG517550
EST:     GTTAGCAACATCGTGCCTGCAATTACCATTATCCTTGCCACACTTTTCAG                         GATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCTGGTAAAAGCGATGGG
genomic: GTTAGCAACATCGTGCCTGCAATTACCATTATCCTTGCCACACTTTTCAGgtaacataca ... tgttttaaagGATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCTGGTAAAAGTGATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcataaattatgaatattgatgtgtgtgttttatgtaaatatttgttttaaagGATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCTGGTAAAAGTGATGGGGACGTTAGTGACAGTGGTTGGATCCATATTGATGATATTCTACAAAGGT
                tattgat  putative branch site (score: 3)
                                           tttgtttt  putative PPT
                          tgtgttttatgtaaat  TA-rich tract