1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAAGTGAGATCAAAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGGgttagtcttctaacagaaccgttgatatcaagaagattttgtaataattacgattaaggctaacatggaaggtttaatttgaacag
species | Arabidopsis thaliana |
transcript | AT2G40900.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGG GCCGGTGATTGATCAGAACATATACTATAEST: gi|116474959|gb|EG517551.1|EG517551
genomic: AAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGGgttagtcttc ... atttgaacagGCCGGTGATTGATCAGAACTTATACTATA
EST: AAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGG GCCGGTGATTGATCAGAACTTATACTATATCGGTCTAAAACTCACATCACCEST: gi|116474958|gb|EG517550.1|EG517550
genomic: AAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGGgttagtcttc ... atttgaacagGCCGGTGATTGATCAGAACTTATACTATATCGGTCTAAAACTCACATCACC
EST: AAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGG GCCGGTGATTGATCAGAACTTATACTATATCGGTCTAAAACTCACATCACC
genomic: AAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGGgttagtcttc ... atttgaacagGCCGGTGATTGATCAGAACTTATACTATATCGGTCTAAAACTCACATCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGTGAGATCAAAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGGgttagtcttctaacagaaccgttgatatcaagaagattttgtaataattacgattaaggctaacatggaaggtttaatttgaacag
- - - - - - AAGATG