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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcattattttttttttttttcaatgaggtctcttttgttttcaagatgctaatcttgtattcttttttccttcaaagGTTCAACTGATGGATCTGTCCGTATGTGGGAAGTGGAGACTGGTAGATGCCTTAAGGTCTGGCAGTTTGACGAAGCTATCATGTGTGTGGCTTGGAATCC

Basic information

species Arabidopsis thaliana
transcript AT2G40360.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059867|gb|DR355624.1|DR355624
EST:     GGCTGTTACTTCAATATCCACTGATAGTTCTGGCGAGTGGATAGCCTCAG                         GTTCAACTGATGGATCTGTCCGTATGTGGGAAGTGGAGACTGGTAGATGCC
genomic: GGCTGTTACTTCAATATCCACTGATAGTTCTGGCGAGTGGATAGCCTCAGgtatttcatt ... tccttcaaagGTTCAACTGATGGATCTGTCCGTATGTGGGAAGTGGAGACTGGTAGATGCC
EST: gi|116458873|gb|EG501465.1|EG501465
EST:     GGCTGTTACTTCAATATCCACTGATAGTTCTGGCGAGTGGATAGCCTCAG                         GTTCAACTGATGGATCTGTCCGTATGTGGGAAGTGGAGACTGGTAGATGCC
genomic: GGCTGTTACTTCAATATCCACTGATAGTTCTGGCGAGTGGATAGCCTCAGgtatttcatt ... tccttcaaagGTTCAACTGATGGATCTGTCCGTATGTGGGAAGTGGAGACTGGTAGATGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaggtctcttttgttttcaagatgctaatcttgtattcttttttccttcaaagGTTCAACTGATGGATCTGTCCGTATGTGGGAAGTGGAGACTGGTAGATGCCTTAAGGTCTGGCAGTTTGACGAAGCTATCATGTGTGTGGCTTGGAATCC
                        tgctaat  putative branch site (score: 2)
                              tcttgtattctttttt  CT-rich tract
                                ttgtattctttttt  TA-rich tract