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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacttatcatctcagtttttggtttcttctttgtttttcccgtattttttcttacattatgtttcttttctccagATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTACCTAGTAGGAAGGATCTTAGACCTTATCCTAACTCCTGTTATCTTGAATATAAAGGCCATACAG

Basic information

species Arabidopsis thaliana
transcript AT2G40360.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059866|gb|DR355623.1|DR355623
EST:     TTGAGCGTTGTTTGGATCTATACCTATGTCCAAGAGTTCGAAAGAAGAGA                         ATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTACCTAGTAGGAAGGAT
genomic: TTGAGCGTTGTTTGGATCTATACCTATGTCCAAGAGTTCGAAAGAAGAGAgtgagtactt ... ttttctccagATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTACCTAGTAGGAAGGAT
EST: gi|124757061|gb|EH847191.1|EH847191
EST:     TGTCCAAGAGTTCGAAAGAAGAGA                         ATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTACCTAGTAGGAAGGAT
genomic: TGTCCAAGAGTTCGAAAGAAGAGAgtgagtactt ... ttttctccagATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTACCTAGTAGGAAGGAT
EST: gi|125234795|gb|EL248880.1|EL248880
EST:     TTGAGCGTTGTTTGGATCTATACCTATGTCCAAGAGTTCGAAAGAAGAGA                         ATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTA
genomic: TTGAGCGTTGTTTGGATCTATACCTATGTCCAAGAGTTCGAAAGAAGAGAgtgagtactt ... ttttctccagATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTA
EST: gi|86059867|gb|DR355624.1|DR355624
EST:     TTGAGCGTTGTTTGGATCTATACCTATGTCCAAGAGTTCGAAAGAAGAGA                         ATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTACCTAGTAGGAAGGAT
genomic: TTGAGCGTTGTTTGGATCTATACCTATGTCCAAGAGTTCGAAAGAAGAGAgtgagtactt ... ttttctccagATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTACCTAGTAGGAAGGAT
EST: gi|116458873|gb|EG501465.1|EG501465
EST:     TTGAGCGTTGTTTGGATCTATACCTATGTCCAAGAGTTCGAAAGAAGAGA                         ATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTACCTAGTAGGAAGGAT
genomic: TTGAGCGTTGTTTGGATCTATACCTATGTCCAAGAGTTCGAAAGAAGAGAgtgagtactt ... ttttctccagATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTACCTAGTAGGAAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttcttctttgtttttcccgtattttttcttacattatgtttcttttctccagATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTACCTAGTAGGAAGGATCTTAGACCTTATCCTAACTCCTGTTATCTTGAATATAAAGGCCATACAG
                            ttcttac  putative branch site (score: 2)
                        ttttttcttacattat  CT-rich tract
                      tattttttcttacatt  TA-rich tract