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gtatgtaacagtttcgcttattctactctaatgtagtttctttggtatttgtccgctgagcgtttcagtaaatatatctgcgcatagGTTTACATCTTTGAGAAGCATCCCTGCGTATGAGAATGCACTGAAGGAGTCTTTTGAGCGTTGTTTGGATCTATACCTATGTCCAAGAGTTCGAAAGAAG
species | Arabidopsis thaliana |
transcript | AT2G40360.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCATATGAGTTGATGTTTGAGGAAGATCGTCCAAAATTCATTCCTACAAG GTTTACATCTTTGAGAAGCATCCCTGCGTATGAGAATGCACTGAAGGAGTCEST: gi|86059867|gb|DR355624.1|DR355624
genomic: TCATATGAGTTGATGTTTGAGGAAGATCGTCCAAAATTCATTCCTACAAGgtatgtaaca ... ctgcgcatagGTTTACATCTTTGAGAAGCATCCCTGCGTATGAGAATGCACTGAAGGAGTC
EST: TCATATGAGTTGATGTTTGAGGAAGATCGTCCAAAATTCATTCCTACAAG GTTTACATCTTTGAGAAGCATCCCTGCGTATGAGAATGCACTGAAGGAGTCEST: gi|116458873|gb|EG501465.1|EG501465
genomic: TCATATGAGTTGATGTTTGAGGAAGATCGTCCAAAATTCATTCCTACAAGgtatgtaaca ... ctgcgcatagGTTTACATCTTTGAGAAGCATCCCTGCGTATGAGAATGCACTGAAGGAGTC
EST: TCATATGAGTTGATGTTTGAGGAAGATCGTCCAAAATTCATTCCTACAAG GTTTACATCTTTGAGAAGCATCCCTGCGTATGAGAATGCACTGAAGGAGTCEST: gi|124741056|gb|EH832218.1|EH832218
genomic: TCATATGAGTTGATGTTTGAGGAAGATCGTCCAAAATTCATTCCTACAAGgtatgtaaca ... ctgcgcatagGTTTACATCTTTGAGAAGCATCCCTGCGTATGAGAATGCACTGAAGGAGTC
EST: ATTCATTCCTACAAG GTTTACATCTTTGAGAAGCATCCCTGCGTATGAGAATGCACTGAAGGAGTC
genomic: ATTCATTCCTACAAGgtatgtaaca ... ctgcgcatagGTTTACATCTTTGAGAAGCATCCCTGCGTATGAGAATGCACTGAAGGAGTC
gtagtttctttggtatttgtccgctgagcgtttcagtaaatatatctgcgcatagGTTTACATCTTTGAGAAGCATCCCTGCGTATGAGAATGCACTGAAGGAGTCTTTTGAGCGTTGTTTGGATCTATACCTATGTCCAAGAGTTCGAAAGAAG
tttcagtaaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaacagtttcgcttattctactctaatgtagtttctttggtatttgtccgctgagcgtttcagtaaatatatctgcgcatagGTTTACATCTTTGAGAAGCATCCCTGCGTATGAGAATGCACTGAAGGAGTCTTTTGAGCGTTGTTTGGATCTATACCTATGTCCAAGAGTTCGAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG