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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATCATCTAGATTATCTTGGAGTGCAGGTGGCTTGCGTTACAGGGCCATGGTTTCTTACCATCTTCATTAATATGCTTCCATGGGAAAGTGgtcaggtttttagaaattggaattttaaactttacttttagaggaaaattgtttatatactcttacgttttctgaatgtcagtctcaaatatcttctttggtataacag

Basic information

species Arabidopsis thaliana
transcript AT2G39280.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39280.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
TTCATCATCTAGATTATCTTGGAGTGCAGGTGGCTTGCGTTACAGGGCCATGGTTTCTTACCATCTTCATTAATATGCTTCCATGGGAAAGTGgtcaggtttttaga-------aattggaattttaaactttacttttagaggaaaattgtttatatactcttacgttttctgaatgtcagtctcaaatatcttctttggtataacag---------------
   |||||||||||||||| |||||||||||||| || ||||| || |||||||| ||  |||| ||  | || |||||||| ||||||||||||||||||||  |        | || | | | ||  ||   |||       ||| |||   || |    | |   ||| |        || | |  |  |||||     ||   |                
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctatttagtagtgtagcctagtcttacttcacaaagttgccaatgtgaaatgagcatttgtacgctattgtttgagcttccttctgatccattgtaattatttggacttcag

upper sequence: AT2G39280.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 9
TTCATCATCTAGATTATCTTGGAGTGCAGGTGGCTTGCGTTACAGGGCCATGGTTTCTTACCATCTTCATTAATATGCTTCCATGGGAAAGTGgtcaggtttt------tagaaattggaattttaaactttac-ttttagaggaaaattgtttatatactcttacgttttctgaatgtcagtctcaaatatcttctttggtataacag---------------
   ||||||| |||||||| |||||||||||||| || ||||| || |||||||| ||  |||| ||  | || |||||||| ||||||||||||||||||||      ||   ||||        | |||    ||       ||| |||   || |    | |   ||| |  |     ||   |  |  |||||    |||   |                
CCAATCATCTGGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggttttatgttctatctattgagtagcgtagcttagtattgcttcacaaagttgccaatgtcaaatgagcatttgtacactattgttcgagcttccttctgatctattgtaattatttggacttcag

upper sequence: AT2G39280.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 9
TTCATCATCTAGATTATCTTGGAGTGCAGGTGGCTTGCGTTACAGGGCCATGGTTTCTTACCATCTTCATTAATATGCTTCCATGGGAAAGTGgtcaggtttt-------------tagaaattgga----attttaaactttacttttagaggaaaattgtttatatactcttacgttttctgaatgtcagt--ctcaaatatcttctttggtataacag----------------------------------------------------------
|| |||| || |||| ||| |||||||||||||| || ||||| || || ||||||||| |||| || || |||||||||||||||||||||||||||  |               |||||||| ||    ||||    | |   ||  |    |||  | |||||||    ||   || |    || ||| |      |  ||  || |||  || |  |                                                          
TTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTGgtcagtctccatcatggcttatatagaaattagatgttatttggggcctacattgcatttaaaatctatttatatttctttgatttatggccatctcactaatcttagcattctcattgtcatgattgcattcataatgtcttggttacaagcttatgggttttgatggctttctcctgacttcag