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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCGCGGAGATGGAGGAGAGGGCAGTTATGGCAGAGTCCATGTTGGAGGCGACTTTGCAGTATCAATCTGGCCAAGTTAAAGCACAACCTTCACCACGgtctgtttctttggcatatatcaagtgaacttggtgtagaaaactagattttccattgggtgcattaagtcaccattatttttctgaaacttttcag

Basic information

species Arabidopsis thaliana
transcript AT2G39280.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39280.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 16
CTCTCGCGGAGATGGAGGAGAGGGCAGTTATGGCAGAGTCCATGTTGGAGGCGACTTTGCAGTATCAATCTGGCCAAGTTAAAGCACAACCTTCACCACGgtctgt--ttctttggcatatatcaagtgaacttggtgtagaaaactagattttccattgggtgcattaagtcaccattatttttctgaaacttttcag
| || || || |||||| ||||||||||||||||||| || ||| ||||||| || |||||||| |||||||||||||||||||  | ||  || ||||||| | |   | ||||  ||||  |    |                                                                      
CACTTGCTGAAATGGAGAAGAGGGCAGTTATGGCAGAATCTATGCTGGAGGCTACATTGCAGTACCAATCTGGCCAAGTTAAAGTGCTACAATCTCCACGgtatataagtttttgaaatatccctgtag----------------------------------------------------------------------

upper sequence: AT2G39280.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 16
CTCTCGCGGAGATGGAGGAGAGGGCAGTTATGGCAGAGTCCATGTTGGAGGCGACTTTGCAGTATCAATCTGGCCAAGTTAAAGCACAACCTTCACCACGgtctgtttct---ttggcatatatcaagtgaacttggtgtagaaaactagattttccattgggtgcattaagtcaccattatttttctgaaacttttcag-
|||| ||  |||||||  ||||||  |||||||||||  | ||||| || || || ||||| || |||||||| |||||||||||||| ||||| || |||| ||||      || ||  |||   | |        |||  |     |  |||   ||||  |  || ||   | || | | || |   | || ||  | 
CTCTTGCTCAGATGGAAAAGAGGGTGGTTATGGCAGAAACAATGTTAGAAGCTACCTTGCAATACCAATCTGGGCAAGTTAAAGCACAGCCTTCTCCCCGgtatgttgtcaactttgccgataaagatttcttcctctgtgcagtttcatctttgttattgactagatgaatctatcactgtgtt-caatatctgttgtga