Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCCAGGTCATCCTGCCCTAGATGATGATTTCAGAAATGCTCTGAGGCGATTGCTAACTGCTTATGCCAGGCATAATCCCTCTGTTGGATACTGTCAGgtattcggttatttaatactgtcacttctgtatcctagtatggttacatgctcacaaaaatgaacatctcagttatttgttatcttgtatcaataaatcatgtgcag

Basic information

species Arabidopsis thaliana
transcript AT2G39280.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39280.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os01g61860.2 (Oryza sativa), 5'ss of exon 4
ATTTCCAGGTCATCCTGCCCTAGATGATGATTTCAGAAATGCTCTGAGGCGATTGCTAACTGCTTATGCCAGGCATAATCCCTCTGTTGGATACTGTCAGgtattcggttatttaatactgtcacttctgtatcctagtatggttacatgctcacaaaaatgaacatctcagttatttgttatcttgtatcaataaatcatgtgcag
 || ||||||||||| || |||||||| |||  |||||||||| | || || ||||| || |||||||| || ||||| || || ||||| |||||||||||||  || | |    ||||      ||      ||  | | || ||  | |      |       | |  |  |  |   || ||| |  |  ||    | |||  
GTTCCCAGGTCATCCCGCACTAGATGAGGATGGCAGAAATGCTTTAAGACGCTTGCTCACAGCTTATGCGAGACATAACCCATCAGTTGGTTACTGTCAGgtat--ggctttcccttacttctgactcatgtcacttttcttgtcactggattgatgtagct--tctttgggaaaccttgcatattgcaagaccaatctgt-tgc--

upper sequence: AT2G39280.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 5
ATTTCCAGGTCATCCTGCCCTAGATGATGATTTCAGAAATGCTCTGAGGCGATTGCTAACTGCTTATGCCAGGCATAATCCCTCTGTTGGATACTGTCAGgtattcggttatttaatactgtcacttctgtatcctagtatggttacatgctcacaaaaatgaacatctcagttatttgttatcttgtatcaataaatcatgtgcag
||| |||||||||||||| |||||||| |||   ||||||||| ||||||| || || || || |||||  | || || |||||||| || |||||||||||| | ||  |||  |    ||   || |||     | | |  ||  ||| |   ||||  ||    ||   ||      | | |   ||  |||| | || |    
ATTCCCAGGTCATCCTGCTCTAGATGAGGATGGTAGAAATGCTTTGAGGCGTTTACTTACGGCATATGCTCGACACAACCCCTCTGTAGGGTACTGTCAGgtaattgg--attggaaggagt---ttatgtggttaattgt--ttttatggttggaaaatagagttactttcttgcaaaatttgtgtcatgcataattgatatagta

upper sequence: AT2G39280.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S31_313V6.1 (Physcomitrella patens), 5'ss of exon 5
ATTTCCAGGTCATCCTGCCCTAGATGATGATTTCAGAAATGCTCTGAGGCGATTGCTAACTGCTTATGCCAGGCATAATCCCTCTGTTGGATACTGTCAGgtattcggttatttaatactgtcacttctgtatcctagtatggttacatg-ctcacaaaaatgaacatctcagttatttgttatcttgtatcaataaatcatgtgcag
 || || ||||||||||| || ||  | ||      ||| |||||||||||  |||| || || |||||| | || ||||| ||||||||||||||||||||   ||| |  ||  | ||  |       |    | ||  |      || |||    || |    || ||  |       |    || ||   |  |   | |    
TTTCCCTGGTCATCCTGCTCTTGACAAGGAAGGTTTAAACGCTCTGAGGCGCATGCTCACGGCATATGCCCGCCACAATCCTTCTGTTGGATACTGTCAGgtg--cgggttcttctttctagcgtggtgatcatgtggtgcgtaagtctggctcgtgcaagtccg-atatctatatacaaatgcgctgaat--gtggacagtctt---