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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggtaagagtgtgaattttttgagatttgttgcttttgaattaggtgactgaaatgtgaatttgcatatacgtag

Basic information

species Arabidopsis thaliana
transcript AT2G36060.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G36060.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G38450.1 (Glycine max), 5'ss of exon 3
TCAGTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggta-agagtgtgaattttttgagatttgttgcttttgaattaggtgactgaaatgtgaatttgcatatacgtag--------------------------
    |||||||| || ||||| ||||| |||||||| || || ||||  || ||||| ||||| || ||||| ||||||||||| || ||||| || || |||||| ||    |   ||||   |   |  | |||||| |  |   | | || ||||    | ||     | |  |                          
---ATTGAAGCTGTTTTGTGATAAAGACTACCCTGAAAAGCCCCCGAGCGTCCGGTTTCATTCACGGATCAATATGACTTGTGTTAATCATGAAACTGGAGTGgtacagttcatagtttttcacatgctcttagctttttacgtgcttcaatgcaatggtgctgtggtgggagggggtatacacaatgctaactgctgtgttt

upper sequence: AT2G36060.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA15G21780.1 (Glycine max), 5'ss of exon 2
------------------TCAGTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggtaagagtgtgaattttttgagatttgttgcttttgaattaggtgactgaaatgtgaatttgcatatacgtag-------
                  |||  ||||||| ||  |||| ||||| ||||| || || || || | ||||||||| ||||| || ||||||||||||||||| || ||||| || || | || |  | |   ||||||        | ||| |||  || ||  |   ||| | ||| ||      | |  ||        
ACATGAAGGAAAAATTTATCAACTGAAGCTGTTTGGTGATAAAGACTACCCAGAAAAGCCCCCTAGTGTTCGGTTTCATTCACGAATCAACATGACTTGTgttaatcatgaaacaggagaggcatcatttataattttccacatgcttttgttttataaatatttt-ttgataagtgcatgctaggacatataatcaagtt

upper sequence: AT2G36060.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv06s0080g01080.t01 (Vitis vinifera), 5'ss of exon 3
TCAGTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggtaagagtgtgaattt-tttgagatttgttgcttttgaattaggtgactgaaatgt-gaatttgcatatacgtag---------------------------
     ||||||| || ||||| |||||||| || ||||| ||||| | ||| ||||||||||| || |||||||||| |||||| || ||||| || || |||||||   ||||| ||  | ||   | |  |   ||||  | | || | | |||| |  ||||||  | |  |                              
---ACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGATTTGTGTGAATCATGAGACTGGAGTGgtaaagttgtgatttgatctgctgtctaattgatttg--tgaagtaattaaaatttcaaatttgtttttctggttacaacatttgatcctgcttccattagt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86078812|gb|DR374569.1|DR374569
EST:     TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGC                         G
genomic: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggtaagag ... atatacgtag-
EST: gi|86078812|gb|DR374569.1|DR374569
EST:     TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGC                         G
genomic: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggtaagag ... atatacgtag-
EST: gi|86078812|gb|DR374569.1|DR374569
EST:     TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGC                         G
genomic: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggtaagag ... atatacgtag-
EST: gi|86078812|gb|DR374569.1|DR374569
EST:     TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGC                         G
genomic: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggtaagag ... atatacgtag-
EST: gi|116467250|gb|EG509842.1|EG509842
EST:     TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGC                         GTGGTGGATTCAAAGAAGTTTGGGGTTCTTGCA
genomic: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggtaagag ... atatacgtagGTGG---ATTCAAAGAAGTTTGGGGTTCTTGCA
EST: gi|116466784|gb|EG509376.1|EG509376
EST:     TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGC                         GTGGTGGATTCAAAGAAGTTTGGGGTTCTTGCA
genomic: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggtaagag ... atatacgtagGTGG---ATTCAAAGAAGTTTGGGGTTCTTGCA