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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCAATTTAGGTCATCAGATCTCACAATCAATCGACTCGAACTCAAATCTCACTTCATCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCGgtaaattttcgatttttttttttttggttcctctttaagtttcctagggtttttgatttgacacgaaacgcagcttgggtttatcttagataatttcaac...

Basic information

species Arabidopsis thaliana
transcript AT2G36060.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164187017|gb|ES030347.1|ES030347
EST:     TCACTTCATCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCG                         TTCCGAGGAATTTCCGGTTGCTGGAGGAGCTTGAACG
genomic: TCACTTCATCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCGgtaaattttc ... taatgtaaagTTCCGAGGAATTTCCGGTTGCTGGAGGAGCTTGAACG
EST: gi|86078812|gb|DR374569.1|DR374569
EST:     TCTTGGCTCAGGATCGAGTGTTGTCG                         TTCCGAGGAATTTCCGGTTG--GGAGGAGCTTGAACGTGGAGAGAAAGGTA
genomic: TCTTGGCTCAGGATCGAGTGTTGTCGgtaaattttc ... taatgtaaagTTCCGAGGAATTTCCGGTTGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTA
EST: gi|124800738|gb|EH890353.1|EH890353
EST:     ATCGAGTGTTGTCG                         TTCCGAGGAATTTCCGGCTGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTA
genomic: ATCGAGTGTTGTCGgtaaattttc ... taatgtaaagTTCCGAGGAATTTCCGGTTGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTA
EST: gi|116467250|gb|EG509842.1|EG509842
EST:     TCACTTCATCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCG                         TTCCGAGGAATTTCCGGTTGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTA
genomic: TCACTTCATCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCGgtaaattttc ... taatgtaaagTTCCGAGGAATTTCCGGTTGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTA
EST: gi|125197326|gb|EL212280.1|EL212280
EST:     TCAGTTCATCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCG                         TTCCGAGGAATTTCCGGTTGCTGGAGGAGCTTG
genomic: TCACTTCATCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCGgtaaattttc ... taatgtaaagTTCCGAGGAATTTCCGGTTGCTGGAGGAGCTTG
EST: gi|125292248|gb|EL306333.1|EL306333
EST:     TTCATCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCG                         TTCCGAGGAATTTCCGGTTGACTGGAGGAGCTTGAAC
genomic: TTCATCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCGgtaaattttc ... taatgtaaagTTCCGAGGAATTTCCGGTTG-CTGGAGGAGCTTGAAC
EST: gi|116466784|gb|EG509376.1|EG509376
EST:     TCACTTCATCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCG                         TTCCGAGGAATTTCCGGTTGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTA
genomic: TCACTTCATCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCGgtaaattttc ... taatgtaaagTTCCGAGGAATTTCCGGTTGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTCAATTTAGGTCATCAGATCTCACAATCAATCGACTCGAACTCAAATCTCACTTCATCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCGgtaaattttcgatttttttttttttggttcctctttaagtttcctagggtttttgatttgacacgaaacgcagcttgggtttatcttagataatttcaac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacgaaa