1 5' 3' | 2 5' 3' | 3 5' 3' |
gtggtaagagtgtgaattttttgagatttgttgcttttgaattaggtgactgaaatgtgaatttgcatatacgtagGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACAATGGAGGACATACTGACTCAATTGAAGAAGGAGATGGCTGCATCGCATA
species | Arabidopsis thaliana |
transcript | AT2G36060.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGC GEST: gi|86078812|gb|DR374569.1|DR374569
genomic: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggtaagag ... atatacgtag-
EST: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGC GEST: gi|86078812|gb|DR374569.1|DR374569
genomic: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggtaagag ... atatacgtag-
EST: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGC GEST: gi|86078812|gb|DR374569.1|DR374569
genomic: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggtaagag ... atatacgtag-
EST: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGC GEST: gi|116467250|gb|EG509842.1|EG509842
genomic: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggtaagag ... atatacgtag-
EST: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGC GTGGTGGATTCAAAGAAGTTTGGGGTTCTTGCAEST: gi|116466784|gb|EG509376.1|EG509376
genomic: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggtaagag ... atatacgtagGTGG---ATTCAAAGAAGTTTGGGGTTCTTGCA
EST: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGC GTGGTGGATTCAAAGAAGTTTGGGGTTCTTGCA
genomic: TTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCgtggtaagag ... atatacgtagGTGG---ATTCAAAGAAGTTTGGGGTTCTTGCA
tgagatttgttgcttttgaattaggtgactgaaatgtgaatttgcatatacgtagGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACAATGGAGGACATACTGACTCAATTGAAGAAGGAGATGGCTGCATCGCATA
ttttgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtaagagtgtgaattttttgagatttgttgcttttgaattaggtgactgaaatgtgaatttgcatatacgtagGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACAATGGAGGACATACTGACTCAATTGAAGAAGGAGATGGCTGCATCGCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG