Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19799087|gb|AU230377.1|AU230377EST: GTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTG-AAGGCTG TCTTGCGGCCATGTG-TGCTGTTGTGTCCTCGACGCCTGCTTCTGAATTTG
genomic: GTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTGAAAGGCTGgttagtcttc ... ctaaatgcagTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTGAATTTG
EST:
gi|86080881|gb|DR376638.1|DR376638EST: GTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTGAAAGGCTG TCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTGAGTTTG
genomic: GTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTGAAAGGCTGgttagtcttc ... ctaaatgcagTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTGAATTTG
EST:
gi|47829166|gb|CK118850.1|CK118850EST: GTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTGAAAGGCTG TCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTGAATTTG
genomic: GTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTGAAAGGCTGgttagtcttc ... ctaaatgcagTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTGAATTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGACACCGCCACCGCTCGGTTACCCGACGAGCGACATCAGTCATGCCACGGTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTGAAAGGCTGgttagtcttctttttactactttttgtttaatttctattataaccggggccgcacgtagaggtgtagtccaagggtgatggattctagtcttctttttactatcaaaccggatcggttattgtgtgttgaaatatagattaattttctttgctttaattttctaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA