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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcttctttttactactttttgtttaatttctattataaccggggccgcacgtagaggtgtagtccaagggtgatggattctagtcttctttttactatcaaaccggatcggttattgtgtgttgaaatatagattaattttctttgctttaattttctaaatgcagTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTGAATTTGAGAAATTCGATTGTTTATTTGATGTTTCATGCAAATTATTTATCATTGT

Basic information

species Arabidopsis thaliana
transcript AT2G32190.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19799087|gb|AU230377.1|AU230377
EST:     GTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTG-AAGGCTG                         TCTTGCGGCCATGTG-TGCTGTTGTGTCCTCGACGCCTGCTTCTGAATTTG
genomic: GTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTGAAAGGCTGgttagtcttc ... ctaaatgcagTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTGAATTTG
EST: gi|86080881|gb|DR376638.1|DR376638
EST:     GTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTGAAAGGCTG                         TCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTGAGTTTG
genomic: GTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTGAAAGGCTGgttagtcttc ... ctaaatgcagTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTGAATTTG
EST: gi|47829166|gb|CK118850.1|CK118850
EST:     GTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTGAAAGGCTG                         TCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTGAATTTG
genomic: GTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTGAAAGGCTGgttagtcttc ... ctaaatgcagTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTGAATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattgtgtgttgaaatatagattaattttctttgctttaattttctaaatgcagTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTGAATTTGAGAAATTCGATTGTTTATTTGATGTTTCATGCAAATTATTTATCATTGT
                                           ttctaaa  putative branch site (score: 2)
                          ttttctttgctttaat  CT-rich tract
             aaatatagattaattt  TA-rich tract